Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20625

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20615 and HSERO_RS20620 are separated by 13 nucleotidesHSERO_RS20620 and HSERO_RS20625 are separated by 17 nucleotidesHSERO_RS20625 and HSERO_RS20630 are separated by 63 nucleotides HSERO_RS20615: HSERO_RS20615 - phenylacetate-CoA oxygenase subunit PaaB, at 4,728,335 to 4,728,619 _RS20615 HSERO_RS20620: HSERO_RS20620 - phenylacetic acid degradation protein, at 4,728,633 to 4,729,385 _RS20620 HSERO_RS20625: HSERO_RS20625 - phenylacetate-CoA oxygenase, at 4,729,403 to 4,729,927 _RS20625 HSERO_RS20630: HSERO_RS20630 - phenylacetic acid degradation protein, at 4,729,991 to 4,731,061 _RS20630 Position (kb) 4729 4730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4728.516 kb on + strand, within HSERO_RS20615at 4728.749 kb on - strand, within HSERO_RS20620at 4728.880 kb on + strand, within HSERO_RS20620at 4729.328 kb on - strandat 4729.379 kb on + strandat 4729.387 kb on - strandat 4729.609 kb on + strand, within HSERO_RS20625at 4729.675 kb on + strand, within HSERO_RS20625at 4730.024 kb on - strandat 4730.261 kb on + strand, within HSERO_RS20630at 4730.425 kb on + strand, within HSERO_RS20630at 4730.871 kb on + strand, within HSERO_RS20630

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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4,728,516 + HSERO_RS20615 0.64 -0.0
4,728,749 - HSERO_RS20620 0.15 -4.0
4,728,880 + HSERO_RS20620 0.33 -0.4
4,729,328 - -0.3
4,729,379 + +0.3
4,729,387 - -0.4
4,729,609 + HSERO_RS20625 0.39 -1.2
4,729,675 + HSERO_RS20625 0.52 +1.4
4,730,024 - -0.1
4,730,261 + HSERO_RS20630 0.25 +0.6
4,730,425 + HSERO_RS20630 0.41 +1.2
4,730,871 + HSERO_RS20630 0.82 -1.7

Or see this region's nucleotide sequence