Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19810 and HSERO_RS19815 are separated by 171 nucleotides HSERO_RS19815 and HSERO_RS19820 overlap by 73 nucleotides HSERO_RS19820 and HSERO_RS19825 are separated by 107 nucleotides
HSERO_RS19810: HSERO_RS19810 - excinuclease ABC subunit A, at 4,546,395 to 4,549,253
_RS19810
HSERO_RS19815: HSERO_RS19815 - phytanoyl-CoA dioxygenase, at 4,549,425 to 4,550,192
_RS19815
HSERO_RS19820: HSERO_RS19820 - methyl-accepting chemotaxis protein, at 4,550,120 to 4,551,790
_RS19820
HSERO_RS19825: HSERO_RS19825 - potassium transporter, at 4,551,898 to 4,553,889
_RS19825
Position (kb) 4550
4551
4552 Strain fitness (log2 ratio) -1
0
1 at 4549.292 kb on + strand at 4549.339 kb on + strand at 4549.484 kb on + strand at 4549.616 kb on + strand, within HSERO_RS19815 at 4549.811 kb on - strand, within HSERO_RS19815 at 4549.932 kb on - strand, within HSERO_RS19815 at 4550.035 kb on + strand, within HSERO_RS19815 at 4550.053 kb on - strand, within HSERO_RS19815 at 4550.093 kb on + strand, within HSERO_RS19815 at 4550.101 kb on - strand, within HSERO_RS19815 at 4550.181 kb on + strand at 4550.348 kb on + strand, within HSERO_RS19820 at 4550.395 kb on + strand, within HSERO_RS19820 at 4550.853 kb on - strand, within HSERO_RS19820 at 4550.944 kb on - strand, within HSERO_RS19820 at 4551.049 kb on + strand, within HSERO_RS19820 at 4551.184 kb on - strand, within HSERO_RS19820 at 4551.301 kb on - strand, within HSERO_RS19820 at 4551.340 kb on - strand, within HSERO_RS19820 at 4551.628 kb on + strand at 4551.843 kb on - strand at 4551.996 kb on + strand at 4552.126 kb on + strand, within HSERO_RS19825 at 4552.187 kb on + strand, within HSERO_RS19825 at 4552.399 kb on + strand, within HSERO_RS19825 at 4552.399 kb on + strand, within HSERO_RS19825 at 4552.429 kb on + strand, within HSERO_RS19825 at 4552.502 kb on + strand, within HSERO_RS19825 at 4552.728 kb on - strand, within HSERO_RS19825 at 4552.749 kb on + strand, within HSERO_RS19825 at 4552.771 kb on + strand, within HSERO_RS19825
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 4,549,292 + +0.8 4,549,339 + +0.1 4,549,484 + +0.4 4,549,616 + HSERO_RS19815 0.25 +0.4 4,549,811 - HSERO_RS19815 0.50 -0.5 4,549,932 - HSERO_RS19815 0.66 -0.4 4,550,035 + HSERO_RS19815 0.79 -1.0 4,550,053 - HSERO_RS19815 0.82 -0.5 4,550,093 + HSERO_RS19815 0.87 +0.1 4,550,101 - HSERO_RS19815 0.88 +0.2 4,550,181 + +0.1 4,550,348 + HSERO_RS19820 0.14 +1.4 4,550,395 + HSERO_RS19820 0.16 +1.3 4,550,853 - HSERO_RS19820 0.44 +0.2 4,550,944 - HSERO_RS19820 0.49 +0.3 4,551,049 + HSERO_RS19820 0.56 +0.4 4,551,184 - HSERO_RS19820 0.64 +0.4 4,551,301 - HSERO_RS19820 0.71 -0.2 4,551,340 - HSERO_RS19820 0.73 +0.3 4,551,628 + -0.6 4,551,843 - -0.5 4,551,996 + +0.2 4,552,126 + HSERO_RS19825 0.11 +0.6 4,552,187 + HSERO_RS19825 0.15 -0.0 4,552,399 + HSERO_RS19825 0.25 +0.1 4,552,399 + HSERO_RS19825 0.25 +0.5 4,552,429 + HSERO_RS19825 0.27 -0.8 4,552,502 + HSERO_RS19825 0.30 +0.3 4,552,728 - HSERO_RS19825 0.42 +0.4 4,552,749 + HSERO_RS19825 0.43 +0.3 4,552,771 + HSERO_RS19825 0.44 +1.0
Or see this region's nucleotide sequence