Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19365

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19360 and HSERO_RS19365 are separated by 16 nucleotidesHSERO_RS19365 and HSERO_RS19370 are separated by 143 nucleotides HSERO_RS19360: HSERO_RS19360 - 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) (from data), at 4,438,700 to 4,439,875 _RS19360 HSERO_RS19365: HSERO_RS19365 - 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data), at 4,439,892 to 4,440,656 _RS19365 HSERO_RS19370: HSERO_RS19370 - gluconolactonase, at 4,440,800 to 4,441,708 _RS19370 Position (kb) 4439 4440 4441Strain fitness (log2 ratio) -1 0 1at 4439.145 kb on - strand, within HSERO_RS19360at 4439.213 kb on - strand, within HSERO_RS19360at 4439.214 kb on + strand, within HSERO_RS19360at 4439.222 kb on - strand, within HSERO_RS19360at 4439.274 kb on + strand, within HSERO_RS19360at 4439.315 kb on + strand, within HSERO_RS19360at 4439.323 kb on - strand, within HSERO_RS19360at 4439.353 kb on + strand, within HSERO_RS19360at 4439.542 kb on - strand, within HSERO_RS19360at 4439.704 kb on - strand, within HSERO_RS19360at 4439.782 kb on + strandat 4439.782 kb on + strandat 4439.790 kb on - strandat 4439.849 kb on + strandat 4439.928 kb on + strandat 4440.066 kb on + strand, within HSERO_RS19365at 4440.079 kb on - strand, within HSERO_RS19365at 4440.186 kb on + strand, within HSERO_RS19365at 4440.199 kb on - strandat 4440.238 kb on - strand, within HSERO_RS19365

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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4,439,145 - HSERO_RS19360 0.38 -0.4
4,439,213 - HSERO_RS19360 0.44 -0.1
4,439,214 + HSERO_RS19360 0.44 +0.2
4,439,222 - HSERO_RS19360 0.44 +0.3
4,439,274 + HSERO_RS19360 0.49 -0.1
4,439,315 + HSERO_RS19360 0.52 +0.5
4,439,323 - HSERO_RS19360 0.53 +0.1
4,439,353 + HSERO_RS19360 0.56 +0.5
4,439,542 - HSERO_RS19360 0.72 +0.3
4,439,704 - HSERO_RS19360 0.85 -0.2
4,439,782 + -0.6
4,439,782 + -0.3
4,439,790 - -1.5
4,439,849 + +0.3
4,439,928 + +0.1
4,440,066 + HSERO_RS19365 0.23 +0.7
4,440,079 - HSERO_RS19365 0.24 +0.9
4,440,186 + HSERO_RS19365 0.38 +0.7
4,440,199 - +1.4
4,440,238 - HSERO_RS19365 0.45 +0.1

Or see this region's nucleotide sequence