Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19005

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19000 and HSERO_RS19005 are separated by 48 nucleotidesHSERO_RS19005 and HSERO_RS19010 are separated by 135 nucleotides HSERO_RS19000: HSERO_RS19000 - twitching motility protein PilT, at 4,356,910 to 4,357,965 _RS19000 HSERO_RS19005: HSERO_RS19005 - glutathione peroxidase, at 4,358,014 to 4,358,499 _RS19005 HSERO_RS19010: HSERO_RS19010 - ketol-acid reductoisomerase, at 4,358,635 to 4,359,651 _RS19010 Position (kb) 4358 4359Strain fitness (log2 ratio) -1 0 1at 4357.107 kb on - strand, within HSERO_RS19000at 4357.189 kb on - strand, within HSERO_RS19000at 4357.287 kb on + strand, within HSERO_RS19000at 4357.366 kb on + strand, within HSERO_RS19000at 4357.390 kb on - strand, within HSERO_RS19000at 4357.401 kb on + strand, within HSERO_RS19000at 4357.411 kb on + strand, within HSERO_RS19000at 4357.589 kb on - strand, within HSERO_RS19000at 4357.616 kb on + strandat 4357.930 kb on - strandat 4358.317 kb on - strand, within HSERO_RS19005at 4358.319 kb on + strand, within HSERO_RS19005at 4358.425 kb on + strand, within HSERO_RS19005at 4358.443 kb on + strand, within HSERO_RS19005at 4358.451 kb on - strandat 4358.796 kb on + strand, within HSERO_RS19010at 4358.978 kb on + strand, within HSERO_RS19010at 4359.449 kb on + strand, within HSERO_RS19010

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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4,357,107 - HSERO_RS19000 0.19 +0.4
4,357,189 - HSERO_RS19000 0.26 +0.4
4,357,287 + HSERO_RS19000 0.36 +0.1
4,357,366 + HSERO_RS19000 0.43 -0.0
4,357,390 - HSERO_RS19000 0.45 -0.3
4,357,401 + HSERO_RS19000 0.46 +1.5
4,357,411 + HSERO_RS19000 0.47 +0.1
4,357,589 - HSERO_RS19000 0.64 -0.1
4,357,616 + +1.7
4,357,930 - +0.2
4,358,317 - HSERO_RS19005 0.62 +0.2
4,358,319 + HSERO_RS19005 0.63 +0.6
4,358,425 + HSERO_RS19005 0.85 +1.3
4,358,443 + HSERO_RS19005 0.88 -0.0
4,358,451 - +0.2
4,358,796 + HSERO_RS19010 0.16 +0.5
4,358,978 + HSERO_RS19010 0.34 +0.3
4,359,449 + HSERO_RS19010 0.80 +0.6

Or see this region's nucleotide sequence