Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14760

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS14755 and HSERO_RS14760 are separated by 323 nucleotidesHSERO_RS14760 and HSERO_RS14765 overlap by 1 nucleotides HSERO_RS14755: HSERO_RS14755 - ATP phosphoribosyltransferase, at 3,349,934 to 3,351,094 _RS14755 HSERO_RS14760: HSERO_RS14760 - membrane protein, at 3,351,418 to 3,352,311 _RS14760 HSERO_RS14765: HSERO_RS14765 - membrane protein, at 3,352,311 to 3,353,663 _RS14765 Position (kb) 3351 3352 3353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3350.531 kb on - strand, within HSERO_RS14755at 3351.334 kb on - strandat 3351.662 kb on + strand, within HSERO_RS14760at 3351.892 kb on - strand, within HSERO_RS14760at 3351.902 kb on - strand, within HSERO_RS14760at 3352.189 kb on - strand, within HSERO_RS14760at 3353.241 kb on + strand, within HSERO_RS14765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
remove
3,350,531 - HSERO_RS14755 0.51 -4.6
3,351,334 - +0.4
3,351,662 + HSERO_RS14760 0.27 +0.9
3,351,892 - HSERO_RS14760 0.53 +1.0
3,351,902 - HSERO_RS14760 0.54 +0.3
3,352,189 - HSERO_RS14760 0.86 +0.7
3,353,241 + HSERO_RS14765 0.69 +0.9

Or see this region's nucleotide sequence