Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12295

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS12285 and HSERO_RS12290 are separated by 107 nucleotidesHSERO_RS12290 and HSERO_RS12295 are separated by 130 nucleotidesHSERO_RS12295 and HSERO_RS12300 are separated by 5 nucleotidesHSERO_RS12300 and HSERO_RS12305 overlap by 4 nucleotides HSERO_RS12285: HSERO_RS12285 - ABC transporter substrate-binding protein, at 2,789,404 to 2,790,618 _RS12285 HSERO_RS12290: HSERO_RS12290 - chemotaxis protein CheY, at 2,790,726 to 2,791,262 _RS12290 HSERO_RS12295: HSERO_RS12295 - histidine kinase, at 2,791,393 to 2,792,775 _RS12295 HSERO_RS12300: HSERO_RS12300 - hypothetical protein, at 2,792,781 to 2,793,638 _RS12300 HSERO_RS12305: HSERO_RS12305 - cytochrome O ubiquinol oxidase, at 2,793,635 to 2,794,111 _RS12305 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -1 0 1 2at 2790.519 kb on + strandat 2790.640 kb on + strandat 2791.602 kb on + strand, within HSERO_RS12295at 2792.205 kb on - strand, within HSERO_RS12295at 2792.208 kb on + strand, within HSERO_RS12295at 2792.221 kb on - strand, within HSERO_RS12295at 2792.550 kb on + strand, within HSERO_RS12295at 2792.893 kb on - strand, within HSERO_RS12300at 2793.281 kb on - strand, within HSERO_RS12300at 2793.296 kb on + strand, within HSERO_RS12300at 2793.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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2,790,519 + +0.5
2,790,640 + +0.5
2,791,602 + HSERO_RS12295 0.15 -0.2
2,792,205 - HSERO_RS12295 0.59 +0.1
2,792,208 + HSERO_RS12295 0.59 +0.8
2,792,221 - HSERO_RS12295 0.60 +0.9
2,792,550 + HSERO_RS12295 0.84 +0.6
2,792,893 - HSERO_RS12300 0.13 +0.4
2,793,281 - HSERO_RS12300 0.58 +0.4
2,793,296 + HSERO_RS12300 0.60 +1.5
2,793,366 - +2.1

Or see this region's nucleotide sequence