Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09910

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS09905 and HSERO_RS09910 are separated by 124 nucleotidesHSERO_RS09910 and HSERO_RS09915 are separated by 3 nucleotidesHSERO_RS09915 and HSERO_RS09920 are separated by 158 nucleotides HSERO_RS09905: HSERO_RS09905 - phenylalanyl-tRNA synthetase subunit beta, at 2,238,959 to 2,241,385 _RS09905 HSERO_RS09910: HSERO_RS09910 - integration host factor subunit alpha, at 2,241,510 to 2,241,863 _RS09910 HSERO_RS09915: HSERO_RS09915 - transcriptional regulator, at 2,241,867 to 2,242,274 _RS09915 HSERO_RS09920: HSERO_RS09920 - acetyltransferase, at 2,242,433 to 2,242,942 _RS09920 Position (kb) 2241 2242Strain fitness (log2 ratio) -1 0 1at 2241.817 kb on + strand, within HSERO_RS09910at 2241.934 kb on + strand, within HSERO_RS09915at 2242.268 kb on + strandat 2242.615 kb on - strand, within HSERO_RS09920at 2242.817 kb on + strand, within HSERO_RS09920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
remove
2,241,817 + HSERO_RS09910 0.87 +0.4
2,241,934 + HSERO_RS09915 0.16 -0.3
2,242,268 + +0.7
2,242,615 - HSERO_RS09920 0.36 +0.1
2,242,817 + HSERO_RS09920 0.75 -0.2

Or see this region's nucleotide sequence