Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04850 and HSERO_RS04855 are separated by 3 nucleotides HSERO_RS04855 and HSERO_RS04860 overlap by 26 nucleotides HSERO_RS04860 and HSERO_RS04865 are separated by 2 nucleotides HSERO_RS04865 and HSERO_RS04870 are separated by 280 nucleotides
HSERO_RS04850: HSERO_RS04850 - ABC transporter ATP-binding protein, at 1,062,327 to 1,063,415
_RS04850
HSERO_RS04855: HSERO_RS04855 - ABC transporter permease, at 1,063,419 to 1,064,309
_RS04855
HSERO_RS04860: HSERO_RS04860 - sugar ABC transporter permease, at 1,064,284 to 1,065,120
_RS04860
HSERO_RS04865: HSERO_RS04865 - membrane protein, at 1,065,123 to 1,065,407
_RS04865
HSERO_RS04870: HSERO_RS04870 - glycerol ABC transporter, substrate-binding component <small>(from data)</small>, at 1,065,688 to 1,067,436
_RS04870
Position (kb) 1064
1065
1066 Strain fitness (log2 ratio) -1
0
1 at 1063.297 kb on - strand, within HSERO_RS04850 at 1063.302 kb on + strand, within HSERO_RS04850 at 1063.509 kb on + strand, within HSERO_RS04855 at 1064.048 kb on - strand, within HSERO_RS04855 at 1064.099 kb on + strand, within HSERO_RS04855 at 1064.255 kb on - strand at 1064.324 kb on - strand at 1064.357 kb on - strand at 1064.408 kb on - strand, within HSERO_RS04860 at 1064.881 kb on - strand at 1065.052 kb on - strand at 1065.555 kb on - strand at 1065.566 kb on - strand at 1065.623 kb on - strand at 1065.879 kb on + strand, within HSERO_RS04870 at 1066.024 kb on + strand, within HSERO_RS04870
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 1,063,297 - HSERO_RS04850 0.89 +0.7 1,063,302 + HSERO_RS04850 0.90 -0.1 1,063,509 + HSERO_RS04855 0.10 +0.1 1,064,048 - HSERO_RS04855 0.71 -0.2 1,064,099 + HSERO_RS04855 0.76 +0.4 1,064,255 - -0.0 1,064,324 - +0.2 1,064,357 - -0.4 1,064,408 - HSERO_RS04860 0.15 +0.7 1,064,881 - +0.2 1,065,052 - +0.3 1,065,555 - +0.1 1,065,566 - -0.5 1,065,623 - +0.4 1,065,879 + HSERO_RS04870 0.11 +0.3 1,066,024 + HSERO_RS04870 0.19 +0.0
Or see this region's nucleotide sequence