Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04515 and HSERO_RS04520 overlap by 47 nucleotides HSERO_RS04520 and HSERO_RS04525 overlap by 4 nucleotides HSERO_RS04525 and HSERO_RS04530 overlap by 4 nucleotides HSERO_RS04530 and HSERO_RS04535 are separated by 40 nucleotides HSERO_RS04535 and HSERO_RS04540 overlap by 1 nucleotides
HSERO_RS04515: HSERO_RS04515 - tail fiber protein, at 990,243 to 990,728
_RS04515
HSERO_RS04520: HSERO_RS04520 - lysozyme, at 990,682 to 991,251
_RS04520
HSERO_RS04525: HSERO_RS04525 - lysozyme, at 991,248 to 991,778
_RS04525
HSERO_RS04530: HSERO_RS04530 - hypothetical protein, at 991,775 to 992,149
_RS04530
HSERO_RS04535: HSERO_RS04535 - tail protein X, at 992,190 to 992,399
_RS04535
HSERO_RS04540: HSERO_RS04540 - head protein, at 992,399 to 992,890
_RS04540
Position (kb) 991
992 Strain fitness (log2 ratio) -1
0
1 at 990.287 kb on - strand at 990.405 kb on - strand, within HSERO_RS04515 at 990.438 kb on + strand, within HSERO_RS04515 at 990.438 kb on + strand, within HSERO_RS04515 at 990.446 kb on - strand, within HSERO_RS04515 at 990.577 kb on - strand, within HSERO_RS04515 at 990.659 kb on + strand, within HSERO_RS04515 at 990.666 kb on + strand, within HSERO_RS04515 at 991.069 kb on + strand, within HSERO_RS04520 at 991.156 kb on + strand, within HSERO_RS04520 at 991.156 kb on + strand, within HSERO_RS04520 at 991.292 kb on - strand at 991.408 kb on + strand, within HSERO_RS04525 at 991.425 kb on - strand, within HSERO_RS04525 at 991.812 kb on - strand at 991.897 kb on + strand, within HSERO_RS04530 at 991.923 kb on + strand, within HSERO_RS04530 at 992.052 kb on + strand, within HSERO_RS04530 at 992.099 kb on - strand, within HSERO_RS04530 at 992.201 kb on + strand at 992.296 kb on + strand, within HSERO_RS04535 at 992.314 kb on - strand, within HSERO_RS04535 at 992.492 kb on - strand, within HSERO_RS04540 at 992.516 kb on - strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.576 kb on + strand, within HSERO_RS04540 at 992.611 kb on + strand, within HSERO_RS04540 at 992.652 kb on - strand, within HSERO_RS04540 at 992.765 kb on - strand, within HSERO_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 990,287 - -0.7 990,405 - HSERO_RS04515 0.33 +0.1 990,438 + HSERO_RS04515 0.40 -0.2 990,438 + HSERO_RS04515 0.40 -1.3 990,446 - HSERO_RS04515 0.42 +0.2 990,577 - HSERO_RS04515 0.69 -0.2 990,659 + HSERO_RS04515 0.86 +0.2 990,666 + HSERO_RS04515 0.87 -0.8 991,069 + HSERO_RS04520 0.68 -0.2 991,156 + HSERO_RS04520 0.83 +0.0 991,156 + HSERO_RS04520 0.83 -0.2 991,292 - -0.3 991,408 + HSERO_RS04525 0.30 +0.9 991,425 - HSERO_RS04525 0.33 +0.5 991,812 - +0.7 991,897 + HSERO_RS04530 0.33 +0.3 991,923 + HSERO_RS04530 0.39 +0.3 992,052 + HSERO_RS04530 0.74 +0.6 992,099 - HSERO_RS04530 0.86 -0.6 992,201 + +0.1 992,296 + HSERO_RS04535 0.50 +0.2 992,314 - HSERO_RS04535 0.59 -0.4 992,492 - HSERO_RS04540 0.19 -0.0 992,516 - HSERO_RS04540 0.24 -0.2 992,576 + HSERO_RS04540 0.36 +0.3 992,576 + HSERO_RS04540 0.36 -0.6 992,611 + HSERO_RS04540 0.43 -0.6 992,652 - HSERO_RS04540 0.51 -0.5 992,765 - HSERO_RS04540 0.74 -0.3
Or see this region's nucleotide sequence