Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03025 and HSERO_RS03030 are separated by 159 nucleotides HSERO_RS03030 and HSERO_RS03035 are separated by 13 nucleotides HSERO_RS03035 and HSERO_RS03040 are separated by 193 nucleotides HSERO_RS03040 and HSERO_RS03045 are separated by 87 nucleotides
HSERO_RS03025: HSERO_RS03025 - biopolymer transport transmembrane protein, at 662,469 to 663,164
_RS03025
HSERO_RS03030: HSERO_RS03030 - dihydrodipicolinate reductase, at 663,324 to 664,130
_RS03030
HSERO_RS03035: HSERO_RS03035 - small protein A, at 664,144 to 664,689
_RS03035
HSERO_RS03040: HSERO_RS03040 - Fur family transcriptional regulator, at 664,883 to 665,308
_RS03040
HSERO_RS03045: HSERO_RS03045 - HrcA family transcriptional regulator, at 665,396 to 666,424
_RS03045
Position (kb) 664
665 Strain fitness (log2 ratio) -1
0
1 at 663.153 kb on + strand at 663.158 kb on + strand at 663.161 kb on - strand at 663.279 kb on - strand at 663.318 kb on - strand at 664.150 kb on - strand at 664.189 kb on - strand at 664.247 kb on - strand, within HSERO_RS03035 at 664.277 kb on - strand, within HSERO_RS03035 at 665.315 kb on + strand at 665.459 kb on + strand at 665.614 kb on + strand, within HSERO_RS03045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 663,153 + -0.6 663,158 + -0.0 663,161 - -0.2 663,279 - -1.1 663,318 - +0.0 664,150 - -0.0 664,189 - +1.0 664,247 - HSERO_RS03035 0.19 +0.4 664,277 - HSERO_RS03035 0.24 +0.4 665,315 + -0.2 665,459 + -1.0 665,614 + HSERO_RS03045 0.21 -0.5
Or see this region's nucleotide sequence