Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01605

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01600 and HSERO_RS01605 are separated by 85 nucleotidesHSERO_RS01605 and HSERO_RS01610 are separated by 586 nucleotides HSERO_RS01600: HSERO_RS01600 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 354,784 to 355,536 _RS01600 HSERO_RS01605: HSERO_RS01605 - amino acid dehydrogenase, at 355,622 to 356,887 _RS01605 HSERO_RS01610: HSERO_RS01610 - enoyl-CoA hydratase, at 357,474 to 358,634 _RS01610 Position (kb) 355 356 357Strain fitness (log2 ratio) -1 0 1at 354.755 kb on + strandat 354.857 kb on - strandat 355.108 kb on - strandat 355.111 kb on + strand, within HSERO_RS01600at 355.124 kb on + strand, within HSERO_RS01600at 355.178 kb on + strand, within HSERO_RS01600at 355.497 kb on - strandat 355.552 kb on + strandat 355.557 kb on + strandat 355.859 kb on + strand, within HSERO_RS01605at 356.070 kb on + strand, within HSERO_RS01605at 356.384 kb on + strand, within HSERO_RS01605at 356.451 kb on - strand, within HSERO_RS01605at 356.504 kb on - strand, within HSERO_RS01605at 356.514 kb on - strand, within HSERO_RS01605at 356.525 kb on - strand, within HSERO_RS01605at 356.742 kb on - strand, within HSERO_RS01605at 356.765 kb on - strandat 356.914 kb on - strandat 357.042 kb on + strandat 357.403 kb on - strandat 357.419 kb on + strandat 357.479 kb on - strandat 357.546 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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354,755 + +0.1
354,857 - +1.0
355,108 - +1.1
355,111 + HSERO_RS01600 0.43 +0.5
355,124 + HSERO_RS01600 0.45 +0.3
355,178 + HSERO_RS01600 0.52 -0.1
355,497 - +0.8
355,552 + -0.3
355,557 + +0.5
355,859 + HSERO_RS01605 0.19 -0.1
356,070 + HSERO_RS01605 0.35 +1.1
356,384 + HSERO_RS01605 0.60 +0.3
356,451 - HSERO_RS01605 0.65 +1.1
356,504 - HSERO_RS01605 0.70 +0.1
356,514 - HSERO_RS01605 0.70 +0.3
356,525 - HSERO_RS01605 0.71 -0.1
356,742 - HSERO_RS01605 0.88 +0.4
356,765 - +0.6
356,914 - +0.1
357,042 + -0.3
357,403 - -0.0
357,419 + +0.8
357,479 - +0.9
357,546 + +0.4

Or see this region's nucleotide sequence