Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03225

Experiment: PYE 25C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep3 28 days
3,386,078	-				-1.2
3,386,093	-				+1.0
3,386,093	-				+1.4
3,386,128	-		CCNA_03223	0.13	-0.7
3,386,129	-		CCNA_03223	0.13	-1.2
3,386,144	-		CCNA_03223	0.16	-3.6
3,386,153	-		CCNA_03223	0.17	-0.9
3,386,166	+		CCNA_03223	0.19	+1.8
3,386,166	+		CCNA_03223	0.19	+0.3
3,386,174	-		CCNA_03223	0.21	-2.1
3,386,178	-		CCNA_03223	0.21	+1.6
3,386,181	+		CCNA_03223	0.22	-0.6
3,386,228	-		CCNA_03223	0.29	-1.7
3,386,233	-		CCNA_03223	0.30	-1.8
3,386,323	+		CCNA_03223	0.45	+0.6
3,386,353	+		CCNA_03223	0.50	+1.2
3,386,426	+		CCNA_03223	0.62	+0.6
3,386,426	+		CCNA_03223	0.62	+0.3
3,386,431	+		CCNA_03223	0.63	+0.4
3,386,431	+		CCNA_03223	0.63	-1.0
3,386,431	+		CCNA_03223	0.63	+0.2
3,386,431	+		CCNA_03223	0.63	+1.8
3,386,431	+		CCNA_03223	0.63	-0.5
3,386,431	+		CCNA_03223	0.63	+0.3
3,386,431	+		CCNA_03223	0.63	-0.1
3,386,431	+		CCNA_03223	0.63	-0.7
3,386,431	+		CCNA_03223	0.63	-1.3
3,386,434	-		CCNA_03223	0.63	-2.6
3,386,434	-		CCNA_03223	0.63	-0.3
3,386,434	-		CCNA_03223	0.63	-0.4
3,386,434	-		CCNA_03223	0.63	-0.9
3,386,434	-		CCNA_03223	0.63	+1.4
3,386,439	-		CCNA_03223	0.64	+0.1
3,386,439	-		CCNA_03223	0.64	+2.1
3,386,439	-		CCNA_03223	0.64	-0.5
3,386,453	+		CCNA_03223	0.66	+1.6
3,386,489	+		CCNA_03223	0.72	+0.4
3,386,497	-		CCNA_03223	0.74	-1.4
3,386,545	+		CCNA_03223	0.81	-0.4
3,386,547	-		CCNA_03223	0.82	-0.3
3,386,570	-		CCNA_03223	0.86	+0.1
3,386,572	+		CCNA_03223	0.86	-1.0
3,386,572	+		CCNA_03223	0.86	+0.1
3,386,580	-		CCNA_03223	0.87	-2.5
3,386,580	-		CCNA_03223	0.87	-0.8
3,386,605	+				-0.0
3,386,684	+				-0.5
3,386,706	-				-0.8
3,386,716	-				-0.3
3,386,786	-		CCNA_03224	0.29	+1.1
3,386,828	+		CCNA_03224	0.46	+0.3
3,386,882	-		CCNA_03224	0.69	+0.3
3,386,911	-		CCNA_03224	0.81	-0.1
3,386,974	+				+1.8
3,387,047	-				-0.0
3,387,083	+				-1.2
3,387,089	-				-0.9
3,387,103	+				-1.9
3,387,126	-				-0.7
3,387,131	-				-0.4
3,387,136	-				+0.5
3,387,165	+				+0.4
3,387,173	-				-2.1
3,387,211	+		CCNA_03225	0.10	-3.3
3,387,211	+		CCNA_03225	0.10	-1.2
3,387,219	-		CCNA_03225	0.11	-1.3
3,387,261	+		CCNA_03225	0.14	-0.3
3,387,280	-		CCNA_03225	0.16	+0.3
3,387,315	-		CCNA_03225	0.19	-0.0
3,387,349	+		CCNA_03225	0.21	+0.5
3,387,369	-		CCNA_03225	0.23	-1.2
3,387,383	-		CCNA_03225	0.24	-1.1
3,387,433	+		CCNA_03225	0.28	-1.4
3,387,502	+		CCNA_03225	0.33	+0.3
3,387,502	+		CCNA_03225	0.33	+0.5
3,387,502	+		CCNA_03225	0.33	-0.6
3,387,510	-		CCNA_03225	0.34	+0.3
3,387,510	-		CCNA_03225	0.34	-0.5
3,387,516	-		CCNA_03225	0.34	+1.9
3,387,516	-		CCNA_03225	0.34	+0.1
3,387,521	-		CCNA_03225	0.34	-2.2
3,387,521	-		CCNA_03225	0.34	-0.0
3,387,521	-		CCNA_03225	0.34	-0.0
3,387,568	-		CCNA_03225	0.38	-0.4
3,387,601	-		CCNA_03225	0.41	-0.5
3,387,689	-		CCNA_03225	0.47	+3.9
3,387,691	+		CCNA_03225	0.48	-2.0
3,387,694	-		CCNA_03225	0.48	-0.7
3,387,706	+		CCNA_03225	0.49	-0.4
3,387,756	-		CCNA_03225	0.53	+1.1
3,387,782	+		CCNA_03225	0.55	+0.3
3,387,841	-		CCNA_03225	0.59	-1.4
3,387,862	+		CCNA_03225	0.61	-0.7
3,387,947	-		CCNA_03225	0.67	-1.4
3,387,947	-		CCNA_03225	0.67	-0.5
3,388,010	-		CCNA_03225	0.72	-1.0
3,388,010	-		CCNA_03225	0.72	-0.0
3,388,010	-		CCNA_03225	0.72	+0.7
3,388,025	-		CCNA_03225	0.73	-2.7
3,388,033	+		CCNA_03225	0.74	-0.5
3,388,033	+		CCNA_03225	0.74	-0.0
3,388,049	-		CCNA_03225	0.75	-1.2
3,388,051	+		CCNA_03225	0.75	+0.4
3,388,084	-		CCNA_03225	0.78	-1.1
3,388,088	+		CCNA_03225	0.78	-1.2
3,388,088	+		CCNA_03225	0.78	-0.8
3,388,096	-		CCNA_03225	0.79	-0.7
3,388,096	-		CCNA_03225	0.79	+0.2
3,388,110	-		CCNA_03225	0.80	-1.4
3,388,137	+		CCNA_03225	0.82	-0.2
3,388,142	+		CCNA_03225	0.82	+2.3
3,388,145	-		CCNA_03225	0.83	+1.7
3,388,150	-		CCNA_03225	0.83	-1.2
3,388,150	-		CCNA_03225	0.83	+1.6
3,388,152	+		CCNA_03225	0.83	-0.6
3,388,160	-		CCNA_03225	0.84	-2.3
3,388,161	-		CCNA_03225	0.84	+1.3
3,388,169	+		CCNA_03225	0.84	-0.5
3,388,200	-		CCNA_03225	0.87	+1.3
3,388,204	-		CCNA_03225	0.87	-1.2
3,388,239	+		CCNA_03225	0.90	+0.7
3,388,280	+				+1.3
3,388,297	+				+1.3
3,388,305	-				+0.9
3,388,310	-				+3.2
3,388,372	+				+1.3
3,388,420	+				+2.3
3,388,437	-				-0.5
3,388,463	+				-1.6
3,388,471	-				+1.7
3,388,473	+				+2.3
3,388,473	+				-0.5
3,388,492	-				+2.3
3,388,502	+		CCNA_03226	0.10	-0.9
3,388,502	+		CCNA_03226	0.10	-0.1
3,388,510	-		CCNA_03226	0.11	+1.3
3,388,514	+		CCNA_03226	0.11	+0.7
3,388,524	+		CCNA_03226	0.12	-1.2
3,388,528	+		CCNA_03226	0.12	+2.3
3,388,528	-		CCNA_03226	0.12	-1.3
3,388,537	-		CCNA_03226	0.13	+0.0
3,388,560	+		CCNA_03226	0.15	+0.3
3,388,574	+		CCNA_03226	0.16	-2.2
3,388,574	+		CCNA_03226	0.16	-0.9
3,388,582	+		CCNA_03226	0.16	-2.0
3,388,593	+		CCNA_03226	0.17	+0.1
3,388,604	+		CCNA_03226	0.18	-0.3
3,388,634	-		CCNA_03226	0.20	-0.0
3,388,634	-		CCNA_03226	0.20	-1.2
3,388,698	+		CCNA_03226	0.25	+0.4
3,388,698	+		CCNA_03226	0.25	-0.6
3,388,706	-		CCNA_03226	0.26	-0.4
3,388,723	-		CCNA_03226	0.27	-0.8
3,388,895	+		CCNA_03226	0.40	-0.0
3,388,906	-		CCNA_03226	0.41	-0.1
3,388,947	+		CCNA_03226	0.44	+0.7
3,388,947	+		CCNA_03226	0.44	+1.3
3,388,947	+		CCNA_03226	0.44	+1.2
3,388,947	+		CCNA_03226	0.44	+1.3
3,388,947	+		CCNA_03226	0.44	-2.7
3,388,947	+		CCNA_03226	0.44	+0.8
3,388,952	+		CCNA_03226	0.44	+1.3
3,388,955	-		CCNA_03226	0.45	-0.2
3,388,955	-		CCNA_03226	0.45	+0.3
3,388,955	-		CCNA_03226	0.45	+3.3
3,388,955	-		CCNA_03226	0.45	+1.0
3,388,960	-		CCNA_03226	0.45	-1.3
3,388,976	+		CCNA_03226	0.46	+0.3
3,388,976	+		CCNA_03226	0.46	-1.3
3,388,976	+		CCNA_03226	0.46	+2.3
3,388,979	-		CCNA_03226	0.46	-0.8
3,388,981	+		CCNA_03226	0.47	+1.3
3,388,981	+		CCNA_03226	0.47	-2.4
3,388,984	-		CCNA_03226	0.47	+0.5
3,388,989	-		CCNA_03226	0.47	-1.0
3,389,074	-		CCNA_03226	0.54	+3.0
3,389,183	-		CCNA_03226	0.62	-0.5
3,389,203	-		CCNA_03226	0.63	-3.5
3,389,237	-		CCNA_03226	0.66	-0.6
3,389,265	+		CCNA_03226	0.68	-1.4
3,389,265	+		CCNA_03226	0.68	+0.3
3,389,265	+		CCNA_03226	0.68	-0.0
3,389,265	+		CCNA_03226	0.68	-2.7
3,389,272	+		CCNA_03226	0.69	-2.5
3,389,273	-		CCNA_03226	0.69	-1.0
3,389,273	-		CCNA_03226	0.69	-0.0
3,389,273	-		CCNA_03226	0.69	-0.4
3,389,273	-		CCNA_03226	0.69	-0.3
3,389,273	-		CCNA_03226	0.69	-2.4
3,389,273	-		CCNA_03226	0.69	+0.3
3,389,273	-		CCNA_03226	0.69	+0.3
3,389,273	-		CCNA_03226	0.69	-0.9
3,389,273	-		CCNA_03226	0.69	-1.3
3,389,275	+		CCNA_03226	0.69	+1.4
3,389,285	+		CCNA_03226	0.70	-2.3
3,389,293	-		CCNA_03226	0.70	-0.6
3,389,301	+		CCNA_03226	0.71	-2.3
3,389,365	-		CCNA_03226	0.76	-1.5