Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03065

Experiment: PYE 25C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep3 28 days
3,215,970	-		CCNA_03063	0.59	-0.1
3,215,982	-		CCNA_03063	0.60	-0.7
3,215,989	+		CCNA_03063	0.60	-1.1
3,216,022	+		CCNA_03063	0.63	-1.6
3,216,030	+		CCNA_03063	0.64	+1.4
3,216,030	+		CCNA_03063	0.64	+2.4
3,216,038	-		CCNA_03063	0.65	+0.7
3,216,038	-		CCNA_03063	0.65	+0.8
3,216,060	+		CCNA_03063	0.67	+2.4
3,216,061	-		CCNA_03063	0.67	+1.7
3,216,061	-		CCNA_03063	0.67	-0.7
3,216,061	-				-1.5
3,216,065	+		CCNA_03063	0.67	+0.3
3,216,065	+		CCNA_03063	0.67	+1.4
3,216,065	+		CCNA_03063	0.67	-0.9
3,216,068	-		CCNA_03063	0.68	-1.1
3,216,073	-		CCNA_03063	0.68	+1.2
3,216,073	-		CCNA_03063	0.68	+0.6
3,216,149	+		CCNA_03063	0.75	+2.4
3,216,174	+		CCNA_03063	0.77	-2.0
3,216,176	+		CCNA_03063	0.77	+1.4
3,216,242	+		CCNA_03063	0.83	+0.0
3,216,242	+		CCNA_03063	0.83	+0.4
3,216,242	+		CCNA_03063	0.83	-0.6
3,216,250	-		CCNA_03063	0.84	-0.9
3,216,273	+		CCNA_03063	0.86	+0.2
3,216,281	-		CCNA_03063	0.87	-1.3
3,216,281	-		CCNA_03063	0.87	-0.6
3,216,286	-		CCNA_03063	0.87	-0.1
3,216,297	+		CCNA_03063	0.88	-0.8
3,216,298	+		CCNA_03063	0.89	+0.1
3,216,308	+		CCNA_03063	0.89	-3.0
3,216,318	+				-0.2
3,216,326	+				+0.4
3,216,326	-				+0.9
3,216,351	-				+0.4
3,216,376	+				-0.2
3,216,384	-				+0.0
3,216,392	+				-0.1
3,216,397	+				+0.7
3,216,405	+				-1.8
3,216,409	-				+0.6
3,216,418	-				+0.6
3,216,418	-				+0.4
3,216,430	+				-0.8
3,216,438	-				+0.7
3,216,449	+		CCNA_03064	0.12	+2.4
3,216,481	-		CCNA_03064	0.21	-0.2
3,216,499	-		CCNA_03064	0.26	+0.6
3,216,509	-		CCNA_03064	0.29	-3.7
3,216,550	-				-3.1
3,216,606	-		CCNA_03064	0.56	-0.6
3,216,606	-		CCNA_03064	0.56	+0.5
3,216,606	-		CCNA_03064	0.56	-0.5
3,216,611	-		CCNA_03064	0.57	-0.2
3,216,634	-		CCNA_03064	0.63	+0.3
3,216,647	-		CCNA_03064	0.67	-0.6
3,216,711	-		CCNA_03064	0.85	-1.1
3,216,712	-		CCNA_03064	0.85	-0.0
3,216,732	-				+0.1
3,216,732	-				-0.0
3,216,771	-				+0.2
3,216,842	+				+1.2
3,216,872	+				+0.2
3,216,880	-				-2.3
3,216,880	-				+0.4
3,216,920	-				-3.1
3,216,926	-				-4.0
3,216,926	-				-1.3
3,216,928	+				-0.0
3,216,977	-		CCNA_03065	0.10	-4.3
3,216,986	-		CCNA_03065	0.13	-1.7
3,217,023	+		CCNA_03065	0.22	-1.5
3,217,023	+		CCNA_03065	0.22	-2.7
3,217,028	+		CCNA_03065	0.24	-0.4
3,217,031	-		CCNA_03065	0.25	-2.8
3,217,031	-		CCNA_03065	0.25	-1.6
3,217,094	+		CCNA_03065	0.41	-0.2
3,217,104	+		CCNA_03065	0.44	-1.0
3,217,116	+		CCNA_03065	0.47	+0.1
3,217,133	+		CCNA_03065	0.52	-3.9
3,217,136	-		CCNA_03065	0.53	+1.4
3,217,140	-		CCNA_03065	0.54	+0.1
3,217,140	-		CCNA_03065	0.54	-1.0
3,217,165	+		CCNA_03065	0.60	-2.2
3,217,175	+		CCNA_03065	0.63	-1.7
3,217,190	-		CCNA_03065	0.67	-2.1
3,217,221	+		CCNA_03065	0.75	-1.8
3,217,221	+		CCNA_03065	0.75	+0.5
3,217,221	+		CCNA_03065	0.75	+0.3
3,217,221	+		CCNA_03065	0.75	-0.8
3,217,221	+		CCNA_03065	0.75	-2.1
3,217,221	+		CCNA_03065	0.75	-1.8
3,217,221	+		CCNA_03065	0.75	-0.2
3,217,229	-		CCNA_03065	0.77	-1.6
3,217,229	-		CCNA_03065	0.77	-2.1
3,217,229	-		CCNA_03065	0.77	-1.3
3,217,229	-		CCNA_03065	0.77	+0.8
3,217,229	-		CCNA_03065	0.77	-0.3
3,217,253	+		CCNA_03065	0.84	-1.3
3,217,255	-		CCNA_03065	0.84	-0.5
3,217,277	+				-1.2
3,217,277	+				-0.8
3,217,277	+				-1.4
3,217,285	-				-2.3
3,217,285	-				-1.9
3,217,287	+				+0.1
3,217,297	+				-0.4
3,217,297	+				+1.1
3,217,297	+				-0.6
3,217,297	+				-0.3
3,217,297	+				-1.2
3,217,305	-				-1.3
3,217,305	-				-2.8
3,217,305	-				-2.9
3,217,305	-				-2.4
3,217,305	-				-2.3
3,217,305	-				-2.1
3,217,305	-				-0.2
3,217,351	+				-1.6
3,217,351	+				-0.9
3,217,351	+				-4.1
3,217,351	+				+0.3
3,217,353	+				-1.3
3,217,353	+				+0.6
3,217,353	+				-1.0
3,217,359	-				-2.7
3,217,359	-				-1.0
3,217,359	-				-0.4
3,217,359	-				+0.2
3,217,361	-				-0.4
3,217,361	-				-1.7
3,217,361	-				-0.4
3,217,388	+				+0.5
3,217,426	+				-1.6
3,217,472	+				+0.7
3,217,478	+				-0.1
3,217,484	+				-3.5
3,217,485	+				+0.0
3,217,485	+				-1.2
3,217,485	+				-2.7
3,217,493	-				-0.7
3,217,493	-				-2.1
3,217,493	-				+0.5
3,217,493	-				-0.4
3,217,502	+				+0.8
3,217,502	+				+0.1
3,217,502	+				+1.4
3,217,502	+				-1.3
3,217,502	+				+1.8
3,217,510	-				-2.3
3,217,510	-				-1.9
3,217,520	+				-1.7
3,217,547	-		CCNA_03066	0.10	+1.1
3,217,564	+		CCNA_03066	0.11	+0.0
3,217,569	+		CCNA_03066	0.11	-0.8
3,217,574	+		CCNA_03066	0.12	-2.6
3,217,588	-		CCNA_03066	0.12	-0.8
3,217,599	+		CCNA_03066	0.13	-1.1
3,217,612	+		CCNA_03066	0.14	+1.6
3,217,624	+		CCNA_03066	0.14	-0.5
3,217,625	-		CCNA_03066	0.14	-3.5
3,217,637	-		CCNA_03066	0.15	-0.9
3,217,637	-		CCNA_03066	0.15	-1.6
3,217,678	-		CCNA_03066	0.17	+1.3
3,217,719	+		CCNA_03066	0.19	+0.5
3,217,722	-		CCNA_03066	0.19	-1.2
3,217,776	-		CCNA_03066	0.21	+1.0
3,217,799	-		CCNA_03066	0.22	-0.5
3,217,818	-		CCNA_03066	0.23	-1.7
3,217,823	-		CCNA_03066	0.24	-0.5
3,217,909	+		CCNA_03066	0.28	-0.4
3,217,935	-		CCNA_03066	0.29	-2.4
3,217,935	-		CCNA_03066	0.29	-2.3
3,217,935	-		CCNA_03066	0.29	+0.3
3,217,961	+		CCNA_03066	0.30	-0.9
3,217,962	+		CCNA_03066	0.30	-0.9
3,217,962	+		CCNA_03066	0.30	-0.7
3,217,970	-		CCNA_03066	0.31	+0.0
3,217,970	-		CCNA_03066	0.31	-0.4
3,217,970	-		CCNA_03066	0.31	-0.4
3,217,970	-		CCNA_03066	0.31	-0.6
3,217,975	-		CCNA_03066	0.31	+0.8
3,217,975	-		CCNA_03066	0.31	+1.4
3,217,980	-		CCNA_03066	0.31	-0.7
3,217,995	+		CCNA_03066	0.32	-0.7
3,218,003	-		CCNA_03066	0.32	+1.8
3,218,003	-		CCNA_03066	0.32	-1.2
3,218,017	+		CCNA_03066	0.33	-2.4
3,218,040	+		CCNA_03066	0.34	-2.2
3,218,076	-		CCNA_03066	0.36	+1.0
3,218,160	+				-0.8
3,218,167	+		CCNA_03066	0.40	-1.8
3,218,168	-		CCNA_03066	0.40	-0.1
3,218,168	-		CCNA_03066	0.40	+0.1
3,218,168	-		CCNA_03066	0.40	+1.4
3,218,185	+		CCNA_03066	0.41	+0.8
3,218,187	-		CCNA_03066	0.41	-1.4
3,218,193	-		CCNA_03066	0.41	-0.2
3,218,193	-		CCNA_03066	0.41	+2.4
3,218,208	-		CCNA_03066	0.42	-1.6
3,218,260	+		CCNA_03066	0.45	-2.3
3,218,277	+		CCNA_03066	0.45	-1.3
3,218,284	-		CCNA_03066	0.46	+0.2
3,218,285	-		CCNA_03066	0.46	+2.4
3,218,300	+		CCNA_03066	0.46	-1.8
3,218,300	+		CCNA_03066	0.46	-0.3
3,218,301	+		CCNA_03066	0.46	+1.8
3,218,301	+		CCNA_03066	0.46	+0.6
3,218,301	+		CCNA_03066	0.46	+1.0
3,218,302	-		CCNA_03066	0.47	+0.6