Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01788

Experiment: PYE 25C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01787 and CCNA_01788 are separated by 254 nucleotidesCCNA_01788 and CCNA_01789 are separated by 178 nucleotidesCCNA_01789 and CCNA_01790 are separated by 139 nucleotides CCNA_01787: CCNA_01787 - transposase, at 1,914,921 to 1,915,856 _01787 CCNA_01788: CCNA_01788 - hypothetical protein, at 1,916,111 to 1,916,470 _01788 CCNA_01789: CCNA_01789 - acetyltransferase, GNAT family, at 1,916,649 to 1,917,164 _01789 CCNA_01790: CCNA_01790 - protein translocase subunit secG, at 1,917,304 to 1,917,771 _01790 Position (kb) 1916 1917Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1916.012 kb on + strandat 1916.068 kb on - strandat 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.380 kb on + strand, within CCNA_01788at 1916.380 kb on + strand, within CCNA_01788at 1916.388 kb on - strand, within CCNA_01788at 1916.405 kb on - strand, within CCNA_01788at 1916.455 kb on + strandat 1916.463 kb on + strandat 1916.476 kb on - strandat 1916.484 kb on - strandat 1916.509 kb on + strandat 1916.517 kb on - strandat 1916.569 kb on + strandat 1916.601 kb on - strandat 1916.601 kb on - strandat 1916.612 kb on + strandat 1916.631 kb on - strandat 1916.652 kb on - strandat 1916.654 kb on + strandat 1916.654 kb on - strandat 1916.668 kb on - strandat 1916.692 kb on - strandat 1916.715 kb on - strand, within CCNA_01789at 1916.775 kb on - strand, within CCNA_01789at 1916.847 kb on + strand, within CCNA_01789at 1916.853 kb on + strand, within CCNA_01789at 1916.853 kb on + strand, within CCNA_01789at 1916.853 kb on + strand, within CCNA_01789at 1916.861 kb on - strand, within CCNA_01789at 1916.861 kb on - strand, within CCNA_01789at 1916.861 kb on - strand, within CCNA_01789at 1916.897 kb on - strand, within CCNA_01789at 1916.897 kb on - strand, within CCNA_01789at 1916.927 kb on + strand, within CCNA_01789at 1916.927 kb on + strand, within CCNA_01789at 1916.949 kb on + strand, within CCNA_01789at 1916.971 kb on + strand, within CCNA_01789at 1916.971 kb on + strand, within CCNA_01789at 1916.979 kb on - strand, within CCNA_01789at 1916.979 kb on - strand, within CCNA_01789at 1916.979 kb on - strand, within CCNA_01789at 1917.053 kb on + strand, within CCNA_01789at 1917.053 kb on + strand, within CCNA_01789at 1917.053 kb on + strand, within CCNA_01789at 1917.061 kb on - strand, within CCNA_01789at 1917.078 kb on - strand, within CCNA_01789at 1917.102 kb on + strand, within CCNA_01789at 1917.105 kb on - strand, within CCNA_01789at 1917.105 kb on - strand, within CCNA_01789at 1917.154 kb on - strandat 1917.176 kb on - strandat 1917.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep3 28 days
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1,916,012 + +0.2
1,916,068 - +0.5
1,916,346 + CCNA_01788 0.65 +1.3
1,916,346 + CCNA_01788 0.65 +1.0
1,916,346 + CCNA_01788 0.65 +1.0
1,916,346 + CCNA_01788 0.65 -0.2
1,916,346 + CCNA_01788 0.65 +1.6
1,916,346 + CCNA_01788 0.65 +2.1
1,916,380 + CCNA_01788 0.75 -0.8
1,916,380 + CCNA_01788 0.75 +1.1
1,916,388 - CCNA_01788 0.77 +1.2
1,916,405 - CCNA_01788 0.82 -0.2
1,916,455 + -2.0
1,916,463 + +0.9
1,916,476 - -0.8
1,916,484 - +1.6
1,916,509 + +0.2
1,916,517 - +0.6
1,916,569 + -0.7
1,916,601 - -2.6
1,916,601 - +1.6
1,916,612 + -0.4
1,916,631 - -1.5
1,916,652 - +0.2
1,916,654 + -0.6
1,916,654 - +1.0
1,916,668 - +0.3
1,916,692 - +0.1
1,916,715 - CCNA_01789 0.13 -0.7
1,916,775 - CCNA_01789 0.24 +0.1
1,916,847 + CCNA_01789 0.38 +1.7
1,916,853 + CCNA_01789 0.40 +0.5
1,916,853 + CCNA_01789 0.40 -1.0
1,916,853 + CCNA_01789 0.40 -0.8
1,916,861 - CCNA_01789 0.41 +1.6
1,916,861 - CCNA_01789 0.41 +0.7
1,916,861 - CCNA_01789 0.41 +1.7
1,916,897 - CCNA_01789 0.48 +0.6
1,916,897 - CCNA_01789 0.48 -0.6
1,916,927 + CCNA_01789 0.54 -0.6
1,916,927 + CCNA_01789 0.54 -1.2
1,916,949 + CCNA_01789 0.58 +0.6
1,916,971 + CCNA_01789 0.62 -0.2
1,916,971 + CCNA_01789 0.62 +1.2
1,916,979 - CCNA_01789 0.64 +0.1
1,916,979 - CCNA_01789 0.64 +0.6
1,916,979 - CCNA_01789 0.64 -0.5
1,917,053 + CCNA_01789 0.78 +0.6
1,917,053 + CCNA_01789 0.78 +0.3
1,917,053 + CCNA_01789 0.78 +0.0
1,917,061 - CCNA_01789 0.80 +0.7
1,917,078 - CCNA_01789 0.83 -0.9
1,917,102 + CCNA_01789 0.88 -1.0
1,917,105 - CCNA_01789 0.88 -0.6
1,917,105 - CCNA_01789 0.88 +0.0
1,917,154 - +0.6
1,917,176 - +3.1
1,917,193 + +0.2

Or see this region's nucleotide sequence