Experiment: PYE 25C survival rep3 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00778 and CCNA_00779 are separated by 566 nucleotides CCNA_00779 and CCNA_00780 are separated by 13 nucleotides CCNA_00780 and CCNA_00781 are separated by 151 nucleotides CCNA_00781 and CCNA_R0015 are separated by 109 nucleotides CCNA_R0015 and CCNA_00782 are separated by 110 nucleotides
CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778
_00778
CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746
_00779
CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686
_00780
CCNA_00781: CCNA_00781 - two-component receiver protein CpdR, at 841,838 to 842,194
_00781
CCNA_R0015: CCNA_R0015 - tRNA-Val, at 842,304 to 842,378
_R0015
CCNA_00782: CCNA_00782 - aminobenzoyl-glutamate transport protein, at 842,489 to 844,108
_00782
Position (kb) 840
841
842 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 839.802 kb on + strand at 839.810 kb on - strand at 839.817 kb on - strand at 839.832 kb on - strand at 839.884 kb on - strand at 840.100 kb on - strand at 840.244 kb on + strand at 840.244 kb on + strand at 840.250 kb on - strand at 840.262 kb on + strand at 840.271 kb on + strand at 840.319 kb on - strand at 840.350 kb on - strand at 840.385 kb on + strand at 840.385 kb on + strand at 840.393 kb on - strand, within CCNA_00779 at 840.393 kb on - strand, within CCNA_00779 at 840.395 kb on + strand, within CCNA_00779 at 840.403 kb on - strand, within CCNA_00779 at 840.450 kb on + strand, within CCNA_00779 at 840.452 kb on + strand, within CCNA_00779 at 840.466 kb on + strand, within CCNA_00779 at 840.474 kb on - strand, within CCNA_00779 at 840.488 kb on + strand, within CCNA_00779 at 840.515 kb on + strand, within CCNA_00779 at 840.523 kb on - strand, within CCNA_00779 at 840.536 kb on + strand, within CCNA_00779 at 840.556 kb on + strand, within CCNA_00779 at 840.600 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.616 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.637 kb on + strand, within CCNA_00779 at 840.657 kb on + strand, within CCNA_00779 at 840.670 kb on - strand, within CCNA_00779 at 840.761 kb on - strand at 840.763 kb on + strand at 840.771 kb on - strand at 840.772 kb on + strand at 840.777 kb on + strand at 840.780 kb on - strand at 840.782 kb on + strand at 840.782 kb on + strand at 840.782 kb on + strand at 840.785 kb on - strand at 840.826 kb on - strand at 840.836 kb on - strand at 840.863 kb on + strand, within CCNA_00780 at 840.863 kb on + strand, within CCNA_00780 at 840.863 kb on + strand, within CCNA_00780 at 840.869 kb on - strand, within CCNA_00780 at 840.871 kb on - strand, within CCNA_00780 at 840.871 kb on - strand, within CCNA_00780 at 840.871 kb on - strand, within CCNA_00780 at 840.874 kb on - strand, within CCNA_00780 at 840.899 kb on + strand, within CCNA_00780 at 840.907 kb on - strand, within CCNA_00780 at 840.907 kb on - strand, within CCNA_00780 at 840.907 kb on - strand, within CCNA_00780 at 840.928 kb on + strand, within CCNA_00780 at 840.930 kb on + strand, within CCNA_00780 at 840.936 kb on - strand, within CCNA_00780 at 840.936 kb on - strand, within CCNA_00780 at 840.938 kb on - strand, within CCNA_00780 at 840.945 kb on + strand, within CCNA_00780 at 840.949 kb on + strand, within CCNA_00780 at 840.957 kb on - strand, within CCNA_00780 at 840.975 kb on - strand, within CCNA_00780 at 840.979 kb on + strand, within CCNA_00780 at 840.982 kb on - strand, within CCNA_00780 at 840.995 kb on - strand, within CCNA_00780 at 841.006 kb on - strand, within CCNA_00780 at 841.006 kb on - strand, within CCNA_00780 at 841.006 kb on - strand, within CCNA_00780 at 841.056 kb on - strand, within CCNA_00780 at 841.060 kb on + strand, within CCNA_00780 at 841.097 kb on - strand, within CCNA_00780 at 841.105 kb on + strand, within CCNA_00780 at 841.139 kb on + strand, within CCNA_00780 at 841.224 kb on - strand, within CCNA_00780 at 841.254 kb on - strand, within CCNA_00780 at 841.258 kb on - strand, within CCNA_00780 at 841.261 kb on + strand, within CCNA_00780 at 841.283 kb on + strand, within CCNA_00780 at 841.283 kb on + strand, within CCNA_00780 at 841.318 kb on + strand, within CCNA_00780 at 841.318 kb on + strand, within CCNA_00780 at 841.323 kb on + strand, within CCNA_00780 at 841.326 kb on - strand, within CCNA_00780 at 841.351 kb on - strand, within CCNA_00780 at 841.351 kb on - strand, within CCNA_00780 at 841.367 kb on + strand, within CCNA_00780 at 841.368 kb on - strand, within CCNA_00780 at 841.381 kb on + strand, within CCNA_00780 at 841.381 kb on + strand, within CCNA_00780 at 841.381 kb on + strand, within CCNA_00780 at 841.382 kb on - strand, within CCNA_00780 at 841.389 kb on - strand, within CCNA_00780 at 841.389 kb on - strand, within CCNA_00780 at 841.419 kb on + strand, within CCNA_00780 at 841.419 kb on - strand, within CCNA_00780 at 841.436 kb on - strand, within CCNA_00780 at 841.480 kb on - strand, within CCNA_00780 at 841.514 kb on + strand, within CCNA_00780 at 841.529 kb on + strand, within CCNA_00780 at 841.529 kb on + strand, within CCNA_00780 at 841.561 kb on + strand, within CCNA_00780 at 841.569 kb on - strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.596 kb on - strand at 841.596 kb on - strand at 841.596 kb on - strand at 841.596 kb on - strand at 841.600 kb on + strand at 841.601 kb on - strand at 841.623 kb on + strand at 841.640 kb on + strand at 841.654 kb on - strand at 841.665 kb on + strand at 841.759 kb on + strand at 841.789 kb on + strand at 841.796 kb on + strand at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.924 kb on + strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.963 kb on - strand, within CCNA_00781 at 842.013 kb on + strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.046 kb on + strand, within CCNA_00781 at 842.073 kb on - strand, within CCNA_00781 at 842.078 kb on - strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.137 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.150 kb on - strand, within CCNA_00781 at 842.179 kb on + strand at 842.187 kb on - strand at 842.476 kb on - strand at 842.484 kb on - strand at 842.522 kb on - strand at 842.549 kb on + strand at 842.559 kb on + strand at 842.559 kb on + strand at 842.567 kb on - strand at 842.567 kb on - strand at 842.567 kb on - strand at 842.597 kb on + strand at 842.597 kb on + strand at 842.597 kb on + strand at 842.602 kb on + strand at 842.604 kb on + strand at 842.604 kb on + strand at 842.605 kb on - strand at 842.605 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.616 kb on + strand at 842.617 kb on - strand at 842.622 kb on - strand at 842.651 kb on - strand, within CCNA_00782 at 842.663 kb on + strand, within CCNA_00782 at 842.664 kb on + strand, within CCNA_00782 at 842.672 kb on - strand, within CCNA_00782
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep3 28 days remove 839,802 + -2.4 839,810 - +0.1 839,817 - +0.4 839,832 - +1.5 839,884 - +3.1 840,100 - -0.5 840,244 + +0.8 840,244 + +2.0 840,250 - -3.0 840,262 + -2.0 840,271 + +0.6 840,319 - +0.1 840,350 - +2.5 840,385 + +1.8 840,385 + -0.0 840,393 - CCNA_00779 0.12 -4.0 840,393 - CCNA_00779 0.12 +0.5 840,395 + CCNA_00779 0.12 +1.9 840,403 - CCNA_00779 0.14 +0.2 840,450 + CCNA_00779 0.26 -0.4 840,452 + CCNA_00779 0.27 -0.7 840,466 + CCNA_00779 0.30 -1.1 840,474 - CCNA_00779 0.32 -1.1 840,488 + CCNA_00779 0.36 -1.8 840,515 + CCNA_00779 0.42 -1.2 840,523 - CCNA_00779 0.44 +2.5 840,536 + CCNA_00779 0.48 -1.5 840,556 + CCNA_00779 0.52 +3.0 840,600 + CCNA_00779 0.63 +0.2 840,601 + CCNA_00779 0.64 -3.5 840,601 + CCNA_00779 0.64 -0.9 840,601 + CCNA_00779 0.64 +0.9 840,601 + CCNA_00779 0.64 -3.3 840,609 - CCNA_00779 0.66 +1.9 840,609 - CCNA_00779 0.66 -2.2 840,609 - CCNA_00779 0.66 -0.3 840,616 + CCNA_00779 0.67 -1.6 840,621 + CCNA_00779 0.69 -1.5 840,621 + CCNA_00779 0.69 -1.9 840,621 + CCNA_00779 0.69 -0.5 840,629 - CCNA_00779 0.71 +3.7 840,629 - CCNA_00779 0.71 +0.2 840,637 + CCNA_00779 0.73 -1.5 840,657 + CCNA_00779 0.78 -0.0 840,670 - CCNA_00779 0.81 +0.2 840,761 - -0.1 840,763 + -1.1 840,771 - -0.2 840,772 + -1.7 840,777 + -0.8 840,780 - -2.6 840,782 + -1.8 840,782 + -0.9 840,782 + -1.6 840,785 - -0.0 840,826 - -0.6 840,836 - +0.2 840,863 + CCNA_00780 0.11 -2.2 840,863 + CCNA_00780 0.11 -2.2 840,863 + CCNA_00780 0.11 -1.9 840,869 - CCNA_00780 0.12 -2.4 840,871 - CCNA_00780 0.12 -1.0 840,871 - CCNA_00780 0.12 -2.0 840,871 - CCNA_00780 0.12 -3.7 840,874 - CCNA_00780 0.12 -1.0 840,899 + CCNA_00780 0.15 +0.1 840,907 - CCNA_00780 0.16 +0.6 840,907 - CCNA_00780 0.16 -0.5 840,907 - CCNA_00780 0.16 -1.5 840,928 + CCNA_00780 0.18 -3.5 840,930 + CCNA_00780 0.18 +0.1 840,936 - CCNA_00780 0.19 -2.6 840,936 - CCNA_00780 0.19 -1.4 840,938 - CCNA_00780 0.19 -0.9 840,945 + CCNA_00780 0.20 -1.2 840,949 + CCNA_00780 0.20 -1.8 840,957 - CCNA_00780 0.21 +0.0 840,975 - CCNA_00780 0.23 -1.9 840,979 + CCNA_00780 0.24 -0.5 840,982 - CCNA_00780 0.24 +1.8 840,995 - CCNA_00780 0.25 -2.3 841,006 - CCNA_00780 0.27 +0.0 841,006 - CCNA_00780 0.27 -2.2 841,006 - CCNA_00780 0.27 -2.4 841,056 - CCNA_00780 0.32 -0.1 841,060 + CCNA_00780 0.32 +0.5 841,097 - CCNA_00780 0.36 -1.3 841,105 + CCNA_00780 0.37 -0.0 841,139 + CCNA_00780 0.41 +1.0 841,224 - CCNA_00780 0.50 -0.3 841,254 - CCNA_00780 0.53 -2.0 841,258 - CCNA_00780 0.54 -0.8 841,261 + CCNA_00780 0.54 -2.1 841,283 + CCNA_00780 0.56 +0.9 841,283 + CCNA_00780 0.56 -1.1 841,318 + CCNA_00780 0.60 -2.2 841,318 + CCNA_00780 0.60 -0.6 841,323 + CCNA_00780 0.61 -2.1 841,326 - CCNA_00780 0.61 -1.2 841,351 - CCNA_00780 0.64 -2.1 841,351 - CCNA_00780 0.64 -0.9 841,367 + CCNA_00780 0.65 -2.1 841,368 - CCNA_00780 0.66 -0.5 841,381 + CCNA_00780 0.67 +0.9 841,381 + CCNA_00780 0.67 -4.4 841,381 + CCNA_00780 0.67 -0.6 841,382 - CCNA_00780 0.67 -0.1 841,389 - CCNA_00780 0.68 -0.8 841,389 - CCNA_00780 0.68 -0.8 841,419 + CCNA_00780 0.71 -1.4 841,419 - CCNA_00780 0.71 -0.3 841,436 - CCNA_00780 0.73 -0.5 841,480 - CCNA_00780 0.78 -2.2 841,514 + CCNA_00780 0.81 -1.7 841,529 + CCNA_00780 0.83 -0.7 841,529 + CCNA_00780 0.83 -1.9 841,561 + CCNA_00780 0.86 -1.4 841,569 - CCNA_00780 0.87 -1.4 841,588 + CCNA_00780 0.89 -0.1 841,588 + CCNA_00780 0.89 -2.3 841,588 + CCNA_00780 0.89 -1.6 841,596 - -1.0 841,596 - -1.5 841,596 - -1.4 841,596 - -1.1 841,600 + +0.1 841,601 - -1.9 841,623 + +2.2 841,640 + -1.0 841,654 - -1.0 841,665 + -0.1 841,759 + -1.6 841,789 + -0.4 841,796 + +1.4 841,919 + CCNA_00781 0.23 -0.0 841,919 + CCNA_00781 0.23 -0.7 841,919 + CCNA_00781 0.23 -0.2 841,919 + CCNA_00781 0.23 +0.2 841,919 + CCNA_00781 0.23 -1.3 841,924 + CCNA_00781 0.24 +0.0 841,927 - CCNA_00781 0.25 -1.4 841,927 - CCNA_00781 0.25 -1.6 841,927 - CCNA_00781 0.25 -1.6 841,963 - CCNA_00781 0.35 -1.1 842,013 + CCNA_00781 0.49 -0.0 842,021 - CCNA_00781 0.51 -2.1 842,021 - CCNA_00781 0.51 -0.2 842,046 + CCNA_00781 0.58 -0.5 842,073 - CCNA_00781 0.66 -2.4 842,078 - CCNA_00781 0.67 -1.2 842,099 + CCNA_00781 0.73 -0.9 842,099 + CCNA_00781 0.73 +0.7 842,099 + CCNA_00781 0.73 +0.5 842,099 + CCNA_00781 0.73 +0.2 842,099 + CCNA_00781 0.73 -2.2 842,099 + CCNA_00781 0.73 -0.8 842,099 + CCNA_00781 0.73 -0.9 842,099 + CCNA_00781 0.73 +0.9 842,099 + CCNA_00781 0.73 +0.8 842,099 + CCNA_00781 0.73 -0.6 842,099 + CCNA_00781 0.73 -0.1 842,099 + CCNA_00781 0.73 +0.1 842,099 + CCNA_00781 0.73 +0.2 842,107 - CCNA_00781 0.75 -0.2 842,107 - CCNA_00781 0.75 -2.5 842,107 - CCNA_00781 0.75 -1.6 842,107 - CCNA_00781 0.75 -1.5 842,107 - CCNA_00781 0.75 -0.2 842,107 - CCNA_00781 0.75 -0.8 842,107 - CCNA_00781 0.75 -1.5 842,107 - CCNA_00781 0.75 -2.9 842,107 - CCNA_00781 0.75 -0.1 842,107 - CCNA_00781 0.75 -2.7 842,134 + CCNA_00781 0.83 -0.1 842,134 + CCNA_00781 0.83 -0.5 842,134 + CCNA_00781 0.83 -0.9 842,134 + CCNA_00781 0.83 +0.1 842,134 + CCNA_00781 0.83 +0.1 842,134 + CCNA_00781 0.83 -0.4 842,134 + CCNA_00781 0.83 -1.0 842,134 + CCNA_00781 0.83 +0.5 842,134 + CCNA_00781 0.83 -0.8 842,134 + CCNA_00781 0.83 -0.6 842,134 + CCNA_00781 0.83 -0.9 842,134 + CCNA_00781 0.83 -0.2 842,134 + CCNA_00781 0.83 -0.2 842,134 + CCNA_00781 0.83 -0.6 842,134 + CCNA_00781 0.83 -0.1 842,134 + CCNA_00781 0.83 -1.6 842,134 + CCNA_00781 0.83 -1.3 842,134 + CCNA_00781 0.83 +0.4 842,134 + CCNA_00781 0.83 -1.6 842,134 + CCNA_00781 0.83 -1.0 842,137 - CCNA_00781 0.84 -2.3 842,142 - CCNA_00781 0.85 +0.0 842,142 - CCNA_00781 0.85 -1.2 842,142 - CCNA_00781 0.85 +0.1 842,142 - CCNA_00781 0.85 -2.0 842,142 - CCNA_00781 0.85 -1.6 842,142 - -0.3 842,142 - CCNA_00781 0.85 -4.4 842,142 - CCNA_00781 0.85 -1.3 842,142 - CCNA_00781 0.85 -1.5 842,142 - CCNA_00781 0.85 +0.9 842,142 - CCNA_00781 0.85 -1.9 842,150 - CCNA_00781 0.87 -0.9 842,179 + +0.9 842,187 - -1.4 842,476 - +1.3 842,484 - -0.1 842,522 - +0.8 842,549 + -1.5 842,559 + -0.5 842,559 + -0.9 842,567 - -0.3 842,567 - +0.5 842,567 - +1.2 842,597 + -1.2 842,597 + -1.9 842,597 + +0.7 842,602 + +0.5 842,604 + -0.5 842,604 + -0.0 842,605 - +0.6 842,605 - +0.1 842,612 - +0.2 842,612 - +0.3 842,612 - +1.6 842,612 - +1.5 842,612 - +0.8 842,616 + +2.5 842,617 - +2.0 842,622 - +1.3 842,651 - CCNA_00782 0.10 -1.3 842,663 + CCNA_00782 0.11 +0.4 842,664 + CCNA_00782 0.11 -0.4 842,672 - CCNA_00782 0.11 +0.8
Or see this region's nucleotide sequence