Experiment: PYE 25C survival rep3 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00701 and CCNA_03888 are separated by 144 nucleotides CCNA_03888 and CCNA_00703 are separated by 102 nucleotides CCNA_00703 and CCNA_00704 are separated by 42 nucleotides CCNA_00704 and CCNA_00705 are separated by 151 nucleotides CCNA_00705 and CCNA_00706 are separated by 274 nucleotides
CCNA_00701: CCNA_00701 - cold shock protein CspB, at 761,611 to 761,820
_00701
CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324
_03888
CCNA_00703: CCNA_00703 - hypothetical protein, at 762,427 to 762,633
_00703
CCNA_00704: CCNA_00704 - hypothetical protein, at 762,676 to 762,873
_00704
CCNA_00705: CCNA_00705 - hypothetical protein, at 763,025 to 763,315
_00705
CCNA_00706: CCNA_00706 - hypothetical protein, at 763,590 to 764,003
_00706
Position (kb) 762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 761.689 kb on - strand, within CCNA_00701 at 761.717 kb on + strand, within CCNA_00701 at 761.717 kb on + strand at 761.722 kb on + strand, within CCNA_00701 at 761.725 kb on - strand, within CCNA_00701 at 761.730 kb on - strand, within CCNA_00701 at 761.743 kb on + strand, within CCNA_00701 at 761.751 kb on + strand, within CCNA_00701 at 761.751 kb on - strand, within CCNA_00701 at 761.759 kb on - strand, within CCNA_00701 at 761.776 kb on - strand, within CCNA_00701 at 761.785 kb on + strand, within CCNA_00701 at 761.831 kb on + strand at 761.839 kb on - strand at 761.839 kb on - strand at 761.848 kb on + strand at 761.849 kb on - strand at 761.856 kb on - strand at 761.905 kb on - strand at 761.907 kb on + strand at 761.910 kb on - strand at 761.921 kb on + strand at 761.932 kb on + strand at 761.945 kb on - strand at 762.035 kb on + strand, within CCNA_03888 at 762.048 kb on + strand, within CCNA_03888 at 762.067 kb on + strand, within CCNA_03888 at 762.084 kb on + strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.108 kb on + strand, within CCNA_03888 at 762.111 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.157 kb on - strand, within CCNA_03888 at 762.167 kb on - strand, within CCNA_03888 at 762.217 kb on + strand, within CCNA_03888 at 762.238 kb on - strand, within CCNA_03888 at 762.239 kb on + strand, within CCNA_03888 at 762.249 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.264 kb on - strand, within CCNA_03888 at 762.279 kb on + strand, within CCNA_03888 at 762.287 kb on - strand, within CCNA_03888 at 762.307 kb on + strand at 762.341 kb on + strand at 762.341 kb on + strand at 762.346 kb on + strand at 762.349 kb on - strand at 762.349 kb on - strand at 762.354 kb on - strand at 762.354 kb on - strand at 762.385 kb on - strand at 762.385 kb on - strand at 762.412 kb on + strand at 762.419 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.475 kb on - strand, within CCNA_00703 at 762.480 kb on + strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.501 kb on - strand, within CCNA_00703 at 762.558 kb on - strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.580 kb on - strand, within CCNA_00703 at 762.583 kb on + strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.632 kb on + strand at 762.669 kb on - strand at 762.696 kb on + strand, within CCNA_00704 at 762.696 kb on + strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.729 kb on + strand, within CCNA_00704 at 762.836 kb on - strand, within CCNA_00704 at 762.847 kb on - strand, within CCNA_00704 at 762.847 kb on - strand, within CCNA_00704 at 762.902 kb on - strand at 762.902 kb on - strand at 762.906 kb on + strand at 762.906 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.924 kb on - strand at 762.951 kb on + strand at 762.951 kb on + strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 763.010 kb on + strand at 763.018 kb on - strand at 763.064 kb on + strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.105 kb on - strand, within CCNA_00705 at 763.125 kb on + strand, within CCNA_00705 at 763.183 kb on - strand, within CCNA_00705 at 763.263 kb on + strand, within CCNA_00705 at 763.273 kb on + strand, within CCNA_00705 at 763.281 kb on - strand, within CCNA_00705 at 763.300 kb on - strand at 763.305 kb on - strand at 763.322 kb on - strand at 763.322 kb on - strand at 763.324 kb on - strand at 763.342 kb on + strand at 763.373 kb on - strand at 763.394 kb on + strand at 763.397 kb on - strand at 763.420 kb on - strand at 763.502 kb on - strand at 763.513 kb on - strand at 763.575 kb on - strand at 763.580 kb on + strand at 763.580 kb on + strand at 763.581 kb on + strand at 763.582 kb on - strand at 763.596 kb on - strand at 763.613 kb on - strand at 763.623 kb on + strand at 763.624 kb on + strand at 763.624 kb on + strand at 763.626 kb on - strand at 763.631 kb on - strand at 763.631 kb on - strand at 763.632 kb on - strand, within CCNA_00706 at 763.649 kb on + strand, within CCNA_00706 at 763.657 kb on - strand, within CCNA_00706 at 763.676 kb on - strand, within CCNA_00706 at 763.676 kb on - strand, within CCNA_00706 at 763.676 kb on - strand, within CCNA_00706 at 763.680 kb on + strand, within CCNA_00706 at 763.707 kb on + strand, within CCNA_00706 at 763.707 kb on + strand, within CCNA_00706 at 763.720 kb on - strand, within CCNA_00706 at 763.720 kb on - strand, within CCNA_00706 at 763.744 kb on + strand, within CCNA_00706 at 763.773 kb on - strand, within CCNA_00706 at 763.773 kb on - strand, within CCNA_00706 at 763.782 kb on - strand, within CCNA_00706 at 763.829 kb on - strand, within CCNA_00706
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep3 28 days remove 761,689 - CCNA_00701 0.37 -1.4 761,717 + CCNA_00701 0.50 +0.3 761,717 + -2.0 761,722 + CCNA_00701 0.53 -0.7 761,725 - CCNA_00701 0.54 +2.5 761,730 - CCNA_00701 0.57 -0.8 761,743 + CCNA_00701 0.63 +0.3 761,751 + CCNA_00701 0.67 +0.3 761,751 - CCNA_00701 0.67 +1.5 761,759 - CCNA_00701 0.70 -0.6 761,776 - CCNA_00701 0.79 +2.0 761,785 + CCNA_00701 0.83 +0.4 761,831 + +1.1 761,839 - -0.7 761,839 - -0.5 761,848 + -1.4 761,849 - +2.5 761,856 - -0.9 761,905 - -0.4 761,907 + -1.3 761,910 - -1.4 761,921 + -1.4 761,932 + +1.5 761,945 - +0.0 762,035 + CCNA_03888 0.19 +1.1 762,048 + CCNA_03888 0.23 +0.1 762,067 + CCNA_03888 0.28 -3.1 762,084 + CCNA_03888 0.33 -0.3 762,092 - CCNA_03888 0.35 +2.4 762,092 - CCNA_03888 0.35 +1.5 762,092 - CCNA_03888 0.35 +0.8 762,092 - CCNA_03888 0.35 -2.1 762,092 - CCNA_03888 0.35 +1.8 762,092 - CCNA_03888 0.35 -0.5 762,092 - CCNA_03888 0.35 -0.2 762,108 + CCNA_03888 0.40 +2.6 762,111 - CCNA_03888 0.41 +0.2 762,116 - CCNA_03888 0.42 -1.3 762,116 - CCNA_03888 0.42 -0.5 762,157 - CCNA_03888 0.53 -1.2 762,167 - CCNA_03888 0.56 +0.6 762,217 + CCNA_03888 0.70 +0.5 762,238 - CCNA_03888 0.76 -0.1 762,239 + CCNA_03888 0.76 +1.7 762,249 + CCNA_03888 0.79 +0.2 762,256 + CCNA_03888 0.81 -2.1 762,256 + CCNA_03888 0.81 +1.3 762,264 - CCNA_03888 0.83 -1.1 762,279 + CCNA_03888 0.87 -0.3 762,287 - CCNA_03888 0.89 -0.2 762,307 + +0.1 762,341 + +0.5 762,341 + +0.6 762,346 + +0.4 762,349 - -2.1 762,349 - +0.2 762,354 - +0.6 762,354 - +0.5 762,385 - -1.4 762,385 - +0.9 762,412 + +1.0 762,419 + -1.2 762,424 + -0.1 762,424 + +0.0 762,424 + +2.1 762,424 + -2.3 762,432 - -0.5 762,432 - +1.6 762,432 - +0.2 762,432 - -2.0 762,432 - +0.3 762,475 - CCNA_00703 0.23 -0.0 762,480 + CCNA_00703 0.26 -1.0 762,488 - CCNA_00703 0.29 +0.5 762,488 - CCNA_00703 0.29 +1.5 762,501 - CCNA_00703 0.36 +0.1 762,558 - CCNA_00703 0.63 +0.4 762,577 + CCNA_00703 0.72 -0.1 762,577 + CCNA_00703 0.72 -0.1 762,580 - CCNA_00703 0.74 +1.2 762,583 + CCNA_00703 0.75 -0.8 762,585 - CCNA_00703 0.76 -2.2 762,585 - CCNA_00703 0.76 +0.6 762,585 - CCNA_00703 0.76 -0.1 762,585 - CCNA_00703 0.76 -0.1 762,585 - CCNA_00703 0.76 +0.5 762,585 - CCNA_00703 0.76 +1.5 762,590 - CCNA_00703 0.79 +0.6 762,590 - CCNA_00703 0.79 -0.7 762,632 + +0.2 762,669 - +0.8 762,696 + CCNA_00704 0.10 -0.2 762,696 + CCNA_00704 0.10 -1.8 762,704 - CCNA_00704 0.14 -0.5 762,704 - CCNA_00704 0.14 -2.6 762,704 - CCNA_00704 0.14 -2.0 762,729 + CCNA_00704 0.27 +2.1 762,836 - CCNA_00704 0.81 -2.0 762,847 - CCNA_00704 0.86 -0.5 762,847 - CCNA_00704 0.86 -2.3 762,902 - -1.7 762,902 - +2.5 762,906 + -1.1 762,906 + +0.8 762,916 + +0.5 762,916 + +1.3 762,916 + +1.0 762,924 - -1.3 762,951 + +0.6 762,951 + +0.3 762,959 - -1.5 762,959 - +1.0 762,959 - +0.1 762,959 - +2.5 762,959 - +0.9 763,010 + -1.5 763,018 - +0.2 763,064 + CCNA_00705 0.13 +2.5 763,072 - CCNA_00705 0.16 +0.1 763,072 - CCNA_00705 0.16 -0.1 763,072 - CCNA_00705 0.16 +0.2 763,105 - CCNA_00705 0.27 +3.3 763,125 + CCNA_00705 0.34 -1.2 763,183 - CCNA_00705 0.54 +0.4 763,263 + CCNA_00705 0.82 +0.1 763,273 + CCNA_00705 0.85 -0.2 763,281 - CCNA_00705 0.88 +0.5 763,300 - +0.8 763,305 - +1.4 763,322 - +0.7 763,322 - -0.8 763,324 - +0.5 763,342 + +0.1 763,373 - +0.3 763,394 + -1.4 763,397 - +0.4 763,420 - +0.5 763,502 - +0.9 763,513 - -0.7 763,575 - +0.7 763,580 + +1.5 763,580 + +0.3 763,581 + +2.5 763,582 - +0.3 763,596 - +0.9 763,613 - +0.4 763,623 + -0.1 763,624 + +0.2 763,624 + +0.1 763,626 - +0.2 763,631 - +0.3 763,631 - +0.6 763,632 - CCNA_00706 0.10 +0.7 763,649 + CCNA_00706 0.14 +0.7 763,657 - CCNA_00706 0.16 +1.0 763,676 - CCNA_00706 0.21 +0.2 763,676 - CCNA_00706 0.21 +0.9 763,676 - CCNA_00706 0.21 +1.5 763,680 + CCNA_00706 0.22 -0.9 763,707 + CCNA_00706 0.28 -2.6 763,707 + CCNA_00706 0.28 -0.4 763,720 - CCNA_00706 0.31 -0.4 763,720 - CCNA_00706 0.31 +3.1 763,744 + CCNA_00706 0.37 +0.2 763,773 - CCNA_00706 0.44 +0.5 763,773 - CCNA_00706 0.44 +3.5 763,782 - CCNA_00706 0.46 +1.1 763,829 - CCNA_00706 0.58 +1.8
Or see this region's nucleotide sequence