Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2524

Experiment: MoYLS4 with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2522 and DVU2523 are separated by 29 nucleotidesDVU2523 and DVU2524 are separated by 435 nucleotidesDVU2524 and hynB-2 are separated by 56 nucleotideshynB-2 and hynA-2 are separated by 12 nucleotides DVU2522: DVU2522 - hypothetical protein (TIGR), at 2,634,024 to 2,634,626 DVU2522 DVU2523: DVU2523 - lipoprotein, putative (TIGR), at 2,634,656 to 2,635,132 DVU2523 DVU2524: DVU2524 - cytochrome c3, putative (TIGR), at 2,635,568 to 2,636,065 DVU2524 DVU2525: hynB-2 - periplasmic [NiFe] hydrogenase, small subunit, isozyme 2 (TIGR), at 2,636,122 to 2,637,036 hynB-2 DVU2526: hynA-2 - periplasmic [NiFe] hydrogenase, large subunit, isozyme 2 (TIGR), at 2,637,049 to 2,638,698 hynA-2 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -2 -1 0 1at 2634.579 kb on + strandat 2634.587 kb on - strandat 2634.602 kb on + strandat 2634.610 kb on - strandat 2634.782 kb on + strand, within DVU2523at 2634.800 kb on - strand, within DVU2523at 2634.825 kb on - strand, within DVU2523at 2634.907 kb on - strand, within DVU2523at 2634.971 kb on - strand, within DVU2523at 2635.198 kb on - strandat 2635.198 kb on - strandat 2635.385 kb on - strandat 2635.455 kb on - strandat 2635.468 kb on - strandat 2635.523 kb on - strandat 2635.532 kb on - strandat 2635.581 kb on + strandat 2635.673 kb on + strand, within DVU2524at 2635.836 kb on - strand, within DVU2524at 2635.850 kb on + strand, within DVU2524at 2635.955 kb on + strand, within DVU2524at 2635.962 kb on - strand, within DVU2524at 2635.962 kb on - strand, within DVU2524at 2636.039 kb on - strandat 2636.067 kb on - strandat 2636.106 kb on + strandat 2636.106 kb on - strandat 2636.137 kb on + strandat 2636.239 kb on + strand, within hynB-2at 2636.242 kb on - strand, within hynB-2at 2636.300 kb on + strand, within hynB-2at 2636.331 kb on + strand, within hynB-2at 2636.401 kb on - strand, within hynB-2at 2636.421 kb on + strand, within hynB-2at 2636.530 kb on - strand, within hynB-2at 2636.546 kb on + strand, within hynB-2at 2636.626 kb on - strand, within hynB-2at 2636.679 kb on + strand, within hynB-2at 2636.682 kb on + strand, within hynB-2at 2636.714 kb on - strand, within hynB-2at 2636.714 kb on - strand, within hynB-2at 2636.720 kb on - strand, within hynB-2at 2636.752 kb on + strand, within hynB-2at 2636.768 kb on + strand, within hynB-2at 2636.772 kb on - strand, within hynB-2at 2636.796 kb on + strand, within hynB-2at 2636.850 kb on - strand, within hynB-2at 2636.890 kb on + strand, within hynB-2at 2636.906 kb on - strand, within hynB-2at 2636.949 kb on + strandat 2637.030 kb on + strandat 2637.038 kb on - strandat 2637.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM
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2,634,579 + -0.6
2,634,587 - -0.3
2,634,602 + -0.2
2,634,610 - +0.0
2,634,782 + DVU2523 0.26 -0.2
2,634,800 - DVU2523 0.30 +0.0
2,634,825 - DVU2523 0.35 -0.2
2,634,907 - DVU2523 0.53 +0.3
2,634,971 - DVU2523 0.66 -1.1
2,635,198 - -1.9
2,635,198 - +0.3
2,635,385 - +0.8
2,635,455 - -0.3
2,635,468 - +1.3
2,635,523 - +0.2
2,635,532 - +0.3
2,635,581 + -0.5
2,635,673 + DVU2524 0.21 +0.1
2,635,836 - DVU2524 0.54 -0.2
2,635,850 + DVU2524 0.57 +0.5
2,635,955 + DVU2524 0.78 +0.3
2,635,962 - DVU2524 0.79 -0.1
2,635,962 - DVU2524 0.79 -0.4
2,636,039 - -0.3
2,636,067 - +0.0
2,636,106 + +0.5
2,636,106 - -0.3
2,636,137 + -0.4
2,636,239 + hynB-2 DVU2525 0.13 -0.4
2,636,242 - hynB-2 DVU2525 0.13 +0.1
2,636,300 + hynB-2 DVU2525 0.19 +0.8
2,636,331 + hynB-2 DVU2525 0.23 -0.2
2,636,401 - hynB-2 DVU2525 0.30 -0.0
2,636,421 + hynB-2 DVU2525 0.33 -1.0
2,636,530 - hynB-2 DVU2525 0.45 -0.1
2,636,546 + hynB-2 DVU2525 0.46 -0.2
2,636,626 - hynB-2 DVU2525 0.55 -0.1
2,636,679 + hynB-2 DVU2525 0.61 +1.3
2,636,682 + hynB-2 DVU2525 0.61 +0.5
2,636,714 - hynB-2 DVU2525 0.65 -0.5
2,636,714 - hynB-2 DVU2525 0.65 +0.0
2,636,720 - hynB-2 DVU2525 0.65 +0.3
2,636,752 + hynB-2 DVU2525 0.69 -0.3
2,636,768 + hynB-2 DVU2525 0.71 -0.7
2,636,772 - hynB-2 DVU2525 0.71 -0.7
2,636,796 + hynB-2 DVU2525 0.74 -0.1
2,636,850 - hynB-2 DVU2525 0.80 +0.7
2,636,890 + hynB-2 DVU2525 0.84 -2.0
2,636,906 - hynB-2 DVU2525 0.86 -0.2
2,636,949 + +1.0
2,637,030 + -0.3
2,637,038 - -1.1
2,637,054 + +0.2

Or see this region's nucleotide sequence