Strain Fitness in Sinorhizobium meliloti 1021 around SMc04453

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01472 and SMc04453 are separated by 1 nucleotides SMc01472: SMc01472 - 50S ribosomal protein L11 methyltransferase, at 2,319,257 to 2,320,132 SMc01472 SMc04453: SMc04453 - hypothetical protein, at 2,320,134 to 2,320,295 SMc04453 Position (kb) 2320 2321Strain fitness (log2 ratio) -2 -1 0 1 2at 2319.151 kb on - strandat 2319.151 kb on - strandat 2319.404 kb on + strand, within SMc01472at 2319.405 kb on - strand, within SMc01472at 2320.060 kb on + strandat 2320.130 kb on + strandat 2320.200 kb on + strand, within SMc04453at 2320.297 kb on + strandat 2320.297 kb on + strandat 2320.298 kb on - strandat 2320.299 kb on + strandat 2320.300 kb on - strandat 2320.300 kb on - strandat 2320.307 kb on + strandat 2320.308 kb on - strandat 2320.463 kb on - strandat 2320.463 kb on - strandat 2320.483 kb on + strandat 2320.484 kb on - strandat 2320.488 kb on - strandat 2320.488 kb on - strandat 2320.488 kb on - strandat 2320.543 kb on + strandat 2320.543 kb on + strandat 2320.565 kb on + strandat 2320.565 kb on - strandat 2320.565 kb on - strandat 2320.601 kb on - strandat 2320.765 kb on + strandat 2320.765 kb on + strandat 2320.766 kb on - strandat 2320.856 kb on + strandat 2320.856 kb on + strandat 2320.857 kb on - strandat 2320.857 kb on - strandat 2320.857 kb on - strandat 2320.875 kb on + strandat 2320.966 kb on + strandat 2321.016 kb on + strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.026 kb on - strandat 2321.185 kb on + strandat 2321.185 kb on + strandat 2321.185 kb on + strandat 2321.236 kb on + strandat 2321.236 kb on + strandat 2321.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,319,151 - +1.7
2,319,151 - -0.5
2,319,404 + SMc01472 0.17 -0.4
2,319,405 - SMc01472 0.17 -1.1
2,320,060 + -0.6
2,320,130 + -0.2
2,320,200 + SMc04453 0.41 -1.3
2,320,297 + +2.1
2,320,297 + +0.9
2,320,298 - -1.5
2,320,299 + +0.1
2,320,300 - +0.5
2,320,300 - +0.4
2,320,307 + -0.1
2,320,308 - +1.1
2,320,463 - -1.6
2,320,463 - +0.5
2,320,483 + +0.4
2,320,484 - -0.1
2,320,488 - +1.7
2,320,488 - +0.3
2,320,488 - -0.1
2,320,543 + -1.2
2,320,543 + +0.3
2,320,565 + -1.1
2,320,565 - +0.9
2,320,565 - -0.4
2,320,601 - -0.0
2,320,765 + +0.2
2,320,765 + +2.7
2,320,766 - -2.5
2,320,856 + +0.5
2,320,856 + +0.5
2,320,857 - +0.0
2,320,857 - +1.5
2,320,857 - +1.8
2,320,875 + -0.2
2,320,966 + -0.2
2,321,016 + +0.6
2,321,017 - +0.3
2,321,017 - +0.3
2,321,017 - +1.1
2,321,017 - +0.4
2,321,017 - +0.0
2,321,026 - +0.7
2,321,185 + -0.2
2,321,185 + -1.5
2,321,185 + +0.3
2,321,236 + -0.3
2,321,236 + +0.2
2,321,237 - +0.2

Or see this region's nucleotide sequence