Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01472 and SMc04453 are separated by 1 nucleotides
SMc01472: SMc01472 - 50S ribosomal protein L11 methyltransferase, at 2,319,257 to 2,320,132
SMc01472
SMc04453: SMc04453 - hypothetical protein, at 2,320,134 to 2,320,295
SMc04453
Position (kb)
2320
2321 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2319.151 kb on - strand at 2319.151 kb on - strand at 2319.404 kb on + strand, within SMc01472 at 2319.405 kb on - strand, within SMc01472 at 2320.060 kb on + strand at 2320.130 kb on + strand at 2320.200 kb on + strand, within SMc04453 at 2320.297 kb on + strand at 2320.297 kb on + strand at 2320.298 kb on - strand at 2320.299 kb on + strand at 2320.300 kb on - strand at 2320.300 kb on - strand at 2320.307 kb on + strand at 2320.308 kb on - strand at 2320.463 kb on - strand at 2320.463 kb on - strand at 2320.483 kb on + strand at 2320.484 kb on - strand at 2320.488 kb on - strand at 2320.488 kb on - strand at 2320.488 kb on - strand at 2320.543 kb on + strand at 2320.543 kb on + strand at 2320.565 kb on + strand at 2320.565 kb on - strand at 2320.565 kb on - strand at 2320.601 kb on - strand at 2320.765 kb on + strand at 2320.765 kb on + strand at 2320.766 kb on - strand at 2320.856 kb on + strand at 2320.856 kb on + strand at 2320.857 kb on - strand at 2320.857 kb on - strand at 2320.857 kb on - strand at 2320.875 kb on + strand at 2320.966 kb on + strand at 2321.016 kb on + strand at 2321.017 kb on - strand at 2321.017 kb on - strand at 2321.017 kb on - strand at 2321.017 kb on - strand at 2321.017 kb on - strand at 2321.026 kb on - strand at 2321.185 kb on + strand at 2321.185 kb on + strand at 2321.185 kb on + strand at 2321.236 kb on + strand at 2321.236 kb on + strand at 2321.237 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,319,151 - +1.7 2,319,151 - -0.5 2,319,404 + SMc01472 0.17 -0.4 2,319,405 - SMc01472 0.17 -1.1 2,320,060 + -0.6 2,320,130 + -0.2 2,320,200 + SMc04453 0.41 -1.3 2,320,297 + +2.1 2,320,297 + +0.9 2,320,298 - -1.5 2,320,299 + +0.1 2,320,300 - +0.5 2,320,300 - +0.4 2,320,307 + -0.1 2,320,308 - +1.1 2,320,463 - -1.6 2,320,463 - +0.5 2,320,483 + +0.4 2,320,484 - -0.1 2,320,488 - +1.7 2,320,488 - +0.3 2,320,488 - -0.1 2,320,543 + -1.2 2,320,543 + +0.3 2,320,565 + -1.1 2,320,565 - +0.9 2,320,565 - -0.4 2,320,601 - -0.0 2,320,765 + +0.2 2,320,765 + +2.7 2,320,766 - -2.5 2,320,856 + +0.5 2,320,856 + +0.5 2,320,857 - +0.0 2,320,857 - +1.5 2,320,857 - +1.8 2,320,875 + -0.2 2,320,966 + -0.2 2,321,016 + +0.6 2,321,017 - +0.3 2,321,017 - +0.3 2,321,017 - +1.1 2,321,017 - +0.4 2,321,017 - +0.0 2,321,026 - +0.7 2,321,185 + -0.2 2,321,185 + -1.5 2,321,185 + +0.3 2,321,236 + -0.3 2,321,236 + +0.2 2,321,237 - +0.2
Or see this region's nucleotide sequence