Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04195 and SMc04440 are separated by 76 nucleotides SMc04440 and SMc04196 are separated by 213 nucleotides SMc04196 and SMc04197 are separated by 141 nucleotides SMc04197 and SMc04198 are separated by 134 nucleotides
SMc04195: SMc04195 - transposase ISRM3, at 2,181,608 to 2,182,810
SMc04195
SMc04440: SMc04440 - hypothetical protein, at 2,182,887 to 2,183,252
SMc04440
SMc04196: SMc04196 - hypothetical protein, at 2,183,466 to 2,184,086
SMc04196
SMc04197: SMc04197 - hypothetical protein, at 2,184,228 to 2,184,746
SMc04197
SMc04198: SMc04198 - phage repressor protein, at 2,184,881 to 2,185,570
SMc04198
Position (kb)
2183
2184
2185 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2182.894 kb on + strand at 2182.940 kb on + strand, within SMc04440 at 2182.966 kb on + strand, within SMc04440 at 2183.068 kb on - strand, within SMc04440 at 2183.068 kb on - strand, within SMc04440 at 2183.085 kb on + strand, within SMc04440 at 2183.093 kb on + strand, within SMc04440 at 2183.125 kb on + strand, within SMc04440 at 2183.242 kb on - strand at 2183.242 kb on - strand at 2183.247 kb on + strand at 2183.252 kb on + strand at 2183.252 kb on + strand at 2183.252 kb on + strand at 2183.253 kb on - strand at 2183.253 kb on - strand at 2183.253 kb on - strand at 2183.253 kb on - strand at 2183.256 kb on + strand at 2183.256 kb on + strand at 2183.257 kb on - strand at 2183.278 kb on - strand at 2183.278 kb on - strand at 2183.477 kb on + strand at 2183.486 kb on + strand at 2183.486 kb on + strand at 2183.488 kb on + strand at 2183.580 kb on + strand, within SMc04196 at 2183.580 kb on + strand, within SMc04196 at 2183.590 kb on + strand, within SMc04196 at 2183.739 kb on + strand, within SMc04196 at 2183.740 kb on - strand, within SMc04196 at 2183.740 kb on - strand, within SMc04196 at 2183.740 kb on - strand, within SMc04196 at 2183.794 kb on + strand, within SMc04196 at 2183.818 kb on + strand, within SMc04196 at 2183.818 kb on + strand, within SMc04196 at 2183.992 kb on - strand, within SMc04196 at 2184.707 kb on - strand at 2184.756 kb on + strand at 2184.756 kb on + strand at 2184.826 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,182,894 + -0.5 2,182,940 + SMc04440 0.14 +0.8 2,182,966 + SMc04440 0.22 +0.9 2,183,068 - SMc04440 0.49 -2.1 2,183,068 - SMc04440 0.49 -1.9 2,183,085 + SMc04440 0.54 -0.6 2,183,093 + SMc04440 0.56 -0.3 2,183,125 + SMc04440 0.65 -0.1 2,183,242 - -0.4 2,183,242 - -0.8 2,183,247 + +1.7 2,183,252 + +1.9 2,183,252 + +1.7 2,183,252 + +0.3 2,183,253 - -0.0 2,183,253 - -1.3 2,183,253 - -0.3 2,183,253 - -1.1 2,183,256 + +0.8 2,183,256 + -1.2 2,183,257 - -0.6 2,183,278 - -0.4 2,183,278 - -0.5 2,183,477 + +1.1 2,183,486 + -1.7 2,183,486 + -1.3 2,183,488 + -0.8 2,183,580 + SMc04196 0.18 -0.4 2,183,580 + SMc04196 0.18 -0.7 2,183,590 + SMc04196 0.20 -0.8 2,183,739 + SMc04196 0.44 +0.4 2,183,740 - SMc04196 0.44 +0.6 2,183,740 - SMc04196 0.44 -0.9 2,183,740 - SMc04196 0.44 -1.5 2,183,794 + SMc04196 0.53 -1.1 2,183,818 + SMc04196 0.57 -2.1 2,183,818 + SMc04196 0.57 -0.2 2,183,992 - SMc04196 0.85 -0.3 2,184,707 - +0.1 2,184,756 + +0.4 2,184,756 + +0.6 2,184,826 + +0.6
Or see this region's nucleotide sequence