Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04129 and SMc04128 are separated by 97 nucleotides SMc04128 and SMc04127 are separated by 718 nucleotides
SMc04129: SMc04129 - oxidoreductase, at 143,458 to 144,759
SMc04129
SMc04128: SMc04128 - heavy metal transporting ATPase, at 144,857 to 147,088
SMc04128
SMc04127: SMc04127 - ABC transporter ATP-binding protein, at 147,807 to 149,342
SMc04127
Position (kb)
144
145
146
147
148 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 143.935 kb on + strand, within SMc04129 at 143.936 kb on - strand, within SMc04129 at 143.963 kb on - strand, within SMc04129 at 143.983 kb on + strand, within SMc04129 at 144.100 kb on + strand, within SMc04129 at 144.100 kb on + strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.101 kb on - strand, within SMc04129 at 144.169 kb on + strand, within SMc04129 at 144.169 kb on + strand, within SMc04129 at 144.208 kb on + strand, within SMc04129 at 144.209 kb on - strand, within SMc04129 at 144.235 kb on + strand, within SMc04129 at 144.236 kb on - strand, within SMc04129 at 144.328 kb on + strand, within SMc04129 at 144.328 kb on + strand, within SMc04129 at 144.340 kb on - strand, within SMc04129 at 144.340 kb on - strand, within SMc04129 at 144.381 kb on + strand, within SMc04129 at 144.410 kb on - strand, within SMc04129 at 144.526 kb on + strand, within SMc04129 at 144.750 kb on + strand at 144.750 kb on + strand at 144.825 kb on + strand at 144.825 kb on + strand at 144.844 kb on + strand at 144.845 kb on - strand at 144.939 kb on + strand at 144.940 kb on - strand at 145.062 kb on - strand at 145.301 kb on + strand, within SMc04128 at 145.302 kb on - strand, within SMc04128 at 145.560 kb on + strand, within SMc04128 at 145.560 kb on + strand, within SMc04128 at 145.561 kb on - strand, within SMc04128 at 145.849 kb on + strand, within SMc04128 at 145.849 kb on + strand, within SMc04128 at 145.850 kb on - strand, within SMc04128 at 145.850 kb on - strand, within SMc04128 at 145.937 kb on + strand, within SMc04128 at 145.938 kb on - strand, within SMc04128 at 145.938 kb on - strand, within SMc04128 at 146.021 kb on + strand, within SMc04128 at 146.022 kb on - strand, within SMc04128 at 146.733 kb on + strand, within SMc04128 at 146.734 kb on - strand, within SMc04128 at 146.734 kb on - strand, within SMc04128 at 146.734 kb on - strand, within SMc04128 at 146.734 kb on - strand, within SMc04128 at 147.136 kb on + strand at 147.137 kb on - strand at 147.137 kb on - strand at 147.143 kb on + strand at 147.143 kb on + strand at 147.144 kb on - strand at 147.144 kb on - strand at 147.144 kb on - strand at 147.145 kb on + strand at 147.145 kb on + strand at 147.145 kb on + strand at 147.145 kb on + strand at 147.145 kb on + strand at 147.145 kb on + strand at 147.145 kb on + strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.149 kb on + strand at 147.149 kb on + strand at 147.149 kb on + strand at 147.150 kb on - strand at 147.150 kb on - strand at 147.308 kb on + strand at 147.341 kb on + strand at 147.387 kb on - strand at 147.387 kb on - strand at 147.458 kb on + strand at 147.579 kb on + strand at 147.580 kb on - strand at 147.580 kb on - strand at 147.638 kb on - strand at 147.639 kb on + strand at 147.669 kb on - strand at 147.676 kb on + strand at 147.678 kb on + strand at 147.723 kb on + strand at 147.724 kb on - strand at 147.729 kb on + strand at 147.731 kb on + strand at 147.732 kb on - strand at 147.732 kb on - strand at 147.807 kb on - strand at 147.807 kb on - strand at 147.815 kb on + strand at 147.815 kb on + strand at 147.816 kb on - strand at 147.838 kb on + strand at 147.884 kb on + strand at 147.884 kb on + strand at 147.960 kb on + strand at 147.969 kb on + strand, within SMc04127 at 147.969 kb on + strand, within SMc04127
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 143,935 + SMc04129 0.37 -0.7 143,936 - SMc04129 0.37 -0.3 143,963 - SMc04129 0.39 +0.7 143,983 + SMc04129 0.40 +0.1 144,100 + SMc04129 0.49 -0.2 144,100 + SMc04129 0.49 -1.1 144,101 - SMc04129 0.49 +1.2 144,101 - SMc04129 0.49 +0.4 144,101 - SMc04129 0.49 -0.2 144,101 - SMc04129 0.49 -0.8 144,169 + SMc04129 0.55 -0.2 144,169 + SMc04129 0.55 +0.3 144,208 + SMc04129 0.58 -1.0 144,209 - SMc04129 0.58 +0.4 144,235 + SMc04129 0.60 +1.9 144,236 - SMc04129 0.60 -1.9 144,328 + SMc04129 0.67 -0.7 144,328 + SMc04129 0.67 +1.4 144,340 - SMc04129 0.68 -0.7 144,340 - SMc04129 0.68 +1.5 144,381 + SMc04129 0.71 -0.1 144,410 - SMc04129 0.73 -0.8 144,526 + SMc04129 0.82 +0.3 144,750 + +0.2 144,750 + -1.7 144,825 + +2.1 144,825 + +0.4 144,844 + +0.8 144,845 - -0.5 144,939 + +1.0 144,940 - +0.7 145,062 - +0.4 145,301 + SMc04128 0.20 +0.2 145,302 - SMc04128 0.20 -0.5 145,560 + SMc04128 0.31 -0.3 145,560 + SMc04128 0.31 +0.2 145,561 - SMc04128 0.32 -1.5 145,849 + SMc04128 0.44 -2.4 145,849 + SMc04128 0.44 -0.4 145,850 - SMc04128 0.44 +0.3 145,850 - SMc04128 0.44 +1.1 145,937 + SMc04128 0.48 +3.0 145,938 - SMc04128 0.48 +0.5 145,938 - SMc04128 0.48 +0.7 146,021 + SMc04128 0.52 -1.4 146,022 - SMc04128 0.52 +0.1 146,733 + SMc04128 0.84 -2.3 146,734 - SMc04128 0.84 -0.5 146,734 - SMc04128 0.84 +0.5 146,734 - SMc04128 0.84 +0.6 146,734 - SMc04128 0.84 -0.8 147,136 + +1.0 147,137 - +1.1 147,137 - -0.7 147,143 + -4.4 147,143 + +0.1 147,144 - +1.9 147,144 - +0.8 147,144 - +1.5 147,145 + +0.6 147,145 + -0.3 147,145 + -2.7 147,145 + -0.5 147,145 + -1.1 147,145 + -0.8 147,145 + +0.1 147,146 - -0.0 147,146 - +0.6 147,146 - +0.8 147,146 - -0.2 147,146 - -0.2 147,146 - -0.8 147,146 - +2.5 147,146 - -0.1 147,146 - +0.0 147,146 - -0.3 147,146 - -0.8 147,146 - +1.5 147,149 + +1.1 147,149 + -0.9 147,149 + -0.4 147,150 - +0.5 147,150 - +0.7 147,308 + -0.9 147,341 + -0.6 147,387 - -0.1 147,387 - -0.6 147,458 + -0.2 147,579 + +1.0 147,580 - -0.7 147,580 - +0.1 147,638 - +0.8 147,639 + +1.2 147,669 - +0.0 147,676 + -0.1 147,678 + +0.4 147,723 + -1.1 147,724 - -0.2 147,729 + +1.5 147,731 + -1.0 147,732 - +0.2 147,732 - -0.1 147,807 - -0.6 147,807 - -0.5 147,815 + +0.1 147,815 + -1.0 147,816 - +0.2 147,838 + +0.1 147,884 + +1.0 147,884 + +0.6 147,960 + +0.2 147,969 + SMc04127 0.11 -1.3 147,969 + SMc04127 0.11 -0.6
Or see this region's nucleotide sequence