Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04036 and SMc04037 are separated by 18 nucleotides SMc04037 and SMc04038 are separated by 150 nucleotides SMc04038 and SMc04039 are separated by 57 nucleotides
SMc04036: SMc04036 - ABC transporter ATP-binding protein, at 3,038,922 to 3,040,625
SMc04036
SMc04037: SMc04037 - peptide ABC transporter, at 3,040,644 to 3,042,158
SMc04037
SMc04038: SMc04038 - partial transposase for ISRM17 protein, at 3,042,309 to 3,043,061
SMc04038
SMc04039: SMc04039 - partial transposase for ISRM17 protein, at 3,043,119 to 3,043,643
SMc04039
Position (kb)
3040
3041
3042
3043 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3039.675 kb on + strand at 3039.677 kb on + strand, within SMc04036 at 3039.678 kb on - strand, within SMc04036 at 3039.678 kb on - strand, within SMc04036 at 3039.930 kb on - strand, within SMc04036 at 3039.930 kb on - strand, within SMc04036 at 3039.995 kb on - strand, within SMc04036 at 3040.376 kb on + strand, within SMc04036 at 3040.512 kb on + strand at 3040.513 kb on - strand at 3040.909 kb on - strand, within SMc04037 at 3040.990 kb on + strand, within SMc04037 at 3041.025 kb on + strand, within SMc04037 at 3041.287 kb on + strand, within SMc04037 at 3041.288 kb on - strand, within SMc04037 at 3041.288 kb on - strand, within SMc04037 at 3041.580 kb on + strand, within SMc04037 at 3041.581 kb on - strand, within SMc04037 at 3041.607 kb on + strand, within SMc04037 at 3041.608 kb on - strand, within SMc04037 at 3041.620 kb on - strand, within SMc04037 at 3041.620 kb on - strand, within SMc04037 at 3041.620 kb on - strand, within SMc04037 at 3041.620 kb on - strand, within SMc04037 at 3041.631 kb on + strand, within SMc04037 at 3041.632 kb on - strand, within SMc04037 at 3041.632 kb on - strand, within SMc04037 at 3041.694 kb on + strand, within SMc04037 at 3041.694 kb on + strand, within SMc04037 at 3041.695 kb on - strand, within SMc04037 at 3041.695 kb on - strand, within SMc04037 at 3041.701 kb on + strand, within SMc04037 at 3041.701 kb on + strand, within SMc04037 at 3041.832 kb on + strand, within SMc04037 at 3041.833 kb on - strand, within SMc04037 at 3041.837 kb on + strand, within SMc04037 at 3041.838 kb on - strand, within SMc04037 at 3041.850 kb on + strand, within SMc04037 at 3041.850 kb on + strand, within SMc04037 at 3041.851 kb on - strand, within SMc04037 at 3041.851 kb on - strand, within SMc04037 at 3041.851 kb on - strand, within SMc04037 at 3041.851 kb on - strand, within SMc04037 at 3041.851 kb on - strand, within SMc04037 at 3041.915 kb on + strand, within SMc04037 at 3041.916 kb on - strand, within SMc04037 at 3041.922 kb on + strand, within SMc04037 at 3041.923 kb on - strand, within SMc04037 at 3041.923 kb on - strand, within SMc04037 at 3041.923 kb on - strand, within SMc04037 at 3041.923 kb on - strand, within SMc04037 at 3041.934 kb on + strand, within SMc04037 at 3041.934 kb on + strand, within SMc04037 at 3042.009 kb on + strand at 3042.010 kb on - strand at 3042.010 kb on - strand at 3042.010 kb on - strand at 3042.059 kb on - strand at 3042.063 kb on + strand at 3042.063 kb on + strand at 3042.063 kb on + strand at 3042.063 kb on + strand at 3042.063 kb on + strand at 3042.063 kb on + strand at 3042.064 kb on - strand at 3042.064 kb on - strand at 3042.064 kb on - strand at 3042.064 kb on - strand at 3042.064 kb on - strand at 3042.072 kb on + strand at 3042.164 kb on - strand at 3042.164 kb on - strand at 3042.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,039,675 + +2.1 3,039,677 + SMc04036 0.44 +0.8 3,039,678 - SMc04036 0.44 -1.0 3,039,678 - SMc04036 0.44 -0.1 3,039,930 - SMc04036 0.59 +0.7 3,039,930 - SMc04036 0.59 +1.0 3,039,995 - SMc04036 0.63 +1.8 3,040,376 + SMc04036 0.85 -0.8 3,040,512 + +0.1 3,040,513 - +0.1 3,040,909 - SMc04037 0.17 +0.2 3,040,990 + SMc04037 0.23 -0.4 3,041,025 + SMc04037 0.25 -0.8 3,041,287 + SMc04037 0.42 -1.0 3,041,288 - SMc04037 0.43 -0.3 3,041,288 - SMc04037 0.43 -0.6 3,041,580 + SMc04037 0.62 -0.7 3,041,581 - SMc04037 0.62 +0.2 3,041,607 + SMc04037 0.64 -1.1 3,041,608 - SMc04037 0.64 +0.0 3,041,620 - SMc04037 0.64 -0.4 3,041,620 - SMc04037 0.64 +0.4 3,041,620 - SMc04037 0.64 -0.5 3,041,620 - SMc04037 0.64 +0.0 3,041,631 + SMc04037 0.65 -1.3 3,041,632 - SMc04037 0.65 -0.2 3,041,632 - SMc04037 0.65 -1.3 3,041,694 + SMc04037 0.69 -0.3 3,041,694 + SMc04037 0.69 +0.0 3,041,695 - SMc04037 0.69 -0.3 3,041,695 - SMc04037 0.69 -0.2 3,041,701 + SMc04037 0.70 +1.4 3,041,701 + SMc04037 0.70 -0.3 3,041,832 + SMc04037 0.78 -1.5 3,041,833 - SMc04037 0.78 -0.1 3,041,837 + SMc04037 0.79 +1.4 3,041,838 - SMc04037 0.79 +0.4 3,041,850 + SMc04037 0.80 +0.0 3,041,850 + SMc04037 0.80 -0.9 3,041,851 - SMc04037 0.80 -0.0 3,041,851 - SMc04037 0.80 -0.4 3,041,851 - SMc04037 0.80 -1.5 3,041,851 - SMc04037 0.80 +1.4 3,041,851 - SMc04037 0.80 -0.8 3,041,915 + SMc04037 0.84 -0.6 3,041,916 - SMc04037 0.84 +0.4 3,041,922 + SMc04037 0.84 -0.4 3,041,923 - SMc04037 0.84 -0.3 3,041,923 - SMc04037 0.84 +0.2 3,041,923 - SMc04037 0.84 +0.2 3,041,923 - SMc04037 0.84 +0.1 3,041,934 + SMc04037 0.85 -0.3 3,041,934 + SMc04037 0.85 -0.9 3,042,009 + -0.1 3,042,010 - -0.1 3,042,010 - +0.1 3,042,010 - -0.4 3,042,059 - -1.5 3,042,063 + -2.3 3,042,063 + +2.5 3,042,063 + -0.1 3,042,063 + -0.9 3,042,063 + +0.4 3,042,063 + +0.0 3,042,064 - +0.1 3,042,064 - +1.4 3,042,064 - -1.0 3,042,064 - +0.9 3,042,064 - +0.2 3,042,072 + +0.2 3,042,164 - -0.4 3,042,164 - -0.2 3,042,168 - +0.2
Or see this region's nucleotide sequence