Strain Fitness in Sinorhizobium meliloti 1021 around SMc04037

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04036 and SMc04037 are separated by 18 nucleotidesSMc04037 and SMc04038 are separated by 150 nucleotidesSMc04038 and SMc04039 are separated by 57 nucleotides SMc04036: SMc04036 - ABC transporter ATP-binding protein, at 3,038,922 to 3,040,625 SMc04036 SMc04037: SMc04037 - peptide ABC transporter, at 3,040,644 to 3,042,158 SMc04037 SMc04038: SMc04038 - partial transposase for ISRM17 protein, at 3,042,309 to 3,043,061 SMc04038 SMc04039: SMc04039 - partial transposase for ISRM17 protein, at 3,043,119 to 3,043,643 SMc04039 Position (kb) 3040 3041 3042 3043Strain fitness (log2 ratio) -2 -1 0 1 2at 3039.675 kb on + strandat 3039.677 kb on + strand, within SMc04036at 3039.678 kb on - strand, within SMc04036at 3039.678 kb on - strand, within SMc04036at 3039.930 kb on - strand, within SMc04036at 3039.930 kb on - strand, within SMc04036at 3039.995 kb on - strand, within SMc04036at 3040.376 kb on + strand, within SMc04036at 3040.512 kb on + strandat 3040.513 kb on - strandat 3040.909 kb on - strand, within SMc04037at 3040.990 kb on + strand, within SMc04037at 3041.025 kb on + strand, within SMc04037at 3041.287 kb on + strand, within SMc04037at 3041.288 kb on - strand, within SMc04037at 3041.288 kb on - strand, within SMc04037at 3041.580 kb on + strand, within SMc04037at 3041.581 kb on - strand, within SMc04037at 3041.607 kb on + strand, within SMc04037at 3041.608 kb on - strand, within SMc04037at 3041.620 kb on - strand, within SMc04037at 3041.620 kb on - strand, within SMc04037at 3041.620 kb on - strand, within SMc04037at 3041.620 kb on - strand, within SMc04037at 3041.631 kb on + strand, within SMc04037at 3041.632 kb on - strand, within SMc04037at 3041.632 kb on - strand, within SMc04037at 3041.694 kb on + strand, within SMc04037at 3041.694 kb on + strand, within SMc04037at 3041.695 kb on - strand, within SMc04037at 3041.695 kb on - strand, within SMc04037at 3041.701 kb on + strand, within SMc04037at 3041.701 kb on + strand, within SMc04037at 3041.832 kb on + strand, within SMc04037at 3041.833 kb on - strand, within SMc04037at 3041.837 kb on + strand, within SMc04037at 3041.838 kb on - strand, within SMc04037at 3041.850 kb on + strand, within SMc04037at 3041.850 kb on + strand, within SMc04037at 3041.851 kb on - strand, within SMc04037at 3041.851 kb on - strand, within SMc04037at 3041.851 kb on - strand, within SMc04037at 3041.851 kb on - strand, within SMc04037at 3041.851 kb on - strand, within SMc04037at 3041.915 kb on + strand, within SMc04037at 3041.916 kb on - strand, within SMc04037at 3041.922 kb on + strand, within SMc04037at 3041.923 kb on - strand, within SMc04037at 3041.923 kb on - strand, within SMc04037at 3041.923 kb on - strand, within SMc04037at 3041.923 kb on - strand, within SMc04037at 3041.934 kb on + strand, within SMc04037at 3041.934 kb on + strand, within SMc04037at 3042.009 kb on + strandat 3042.010 kb on - strandat 3042.010 kb on - strandat 3042.010 kb on - strandat 3042.059 kb on - strandat 3042.063 kb on + strandat 3042.063 kb on + strandat 3042.063 kb on + strandat 3042.063 kb on + strandat 3042.063 kb on + strandat 3042.063 kb on + strandat 3042.064 kb on - strandat 3042.064 kb on - strandat 3042.064 kb on - strandat 3042.064 kb on - strandat 3042.064 kb on - strandat 3042.072 kb on + strandat 3042.164 kb on - strandat 3042.164 kb on - strandat 3042.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,039,675 + +2.1
3,039,677 + SMc04036 0.44 +0.8
3,039,678 - SMc04036 0.44 -1.0
3,039,678 - SMc04036 0.44 -0.1
3,039,930 - SMc04036 0.59 +0.7
3,039,930 - SMc04036 0.59 +1.0
3,039,995 - SMc04036 0.63 +1.8
3,040,376 + SMc04036 0.85 -0.8
3,040,512 + +0.1
3,040,513 - +0.1
3,040,909 - SMc04037 0.17 +0.2
3,040,990 + SMc04037 0.23 -0.4
3,041,025 + SMc04037 0.25 -0.8
3,041,287 + SMc04037 0.42 -1.0
3,041,288 - SMc04037 0.43 -0.3
3,041,288 - SMc04037 0.43 -0.6
3,041,580 + SMc04037 0.62 -0.7
3,041,581 - SMc04037 0.62 +0.2
3,041,607 + SMc04037 0.64 -1.1
3,041,608 - SMc04037 0.64 +0.0
3,041,620 - SMc04037 0.64 -0.4
3,041,620 - SMc04037 0.64 +0.4
3,041,620 - SMc04037 0.64 -0.5
3,041,620 - SMc04037 0.64 +0.0
3,041,631 + SMc04037 0.65 -1.3
3,041,632 - SMc04037 0.65 -0.2
3,041,632 - SMc04037 0.65 -1.3
3,041,694 + SMc04037 0.69 -0.3
3,041,694 + SMc04037 0.69 +0.0
3,041,695 - SMc04037 0.69 -0.3
3,041,695 - SMc04037 0.69 -0.2
3,041,701 + SMc04037 0.70 +1.4
3,041,701 + SMc04037 0.70 -0.3
3,041,832 + SMc04037 0.78 -1.5
3,041,833 - SMc04037 0.78 -0.1
3,041,837 + SMc04037 0.79 +1.4
3,041,838 - SMc04037 0.79 +0.4
3,041,850 + SMc04037 0.80 +0.0
3,041,850 + SMc04037 0.80 -0.9
3,041,851 - SMc04037 0.80 -0.0
3,041,851 - SMc04037 0.80 -0.4
3,041,851 - SMc04037 0.80 -1.5
3,041,851 - SMc04037 0.80 +1.4
3,041,851 - SMc04037 0.80 -0.8
3,041,915 + SMc04037 0.84 -0.6
3,041,916 - SMc04037 0.84 +0.4
3,041,922 + SMc04037 0.84 -0.4
3,041,923 - SMc04037 0.84 -0.3
3,041,923 - SMc04037 0.84 +0.2
3,041,923 - SMc04037 0.84 +0.2
3,041,923 - SMc04037 0.84 +0.1
3,041,934 + SMc04037 0.85 -0.3
3,041,934 + SMc04037 0.85 -0.9
3,042,009 + -0.1
3,042,010 - -0.1
3,042,010 - +0.1
3,042,010 - -0.4
3,042,059 - -1.5
3,042,063 + -2.3
3,042,063 + +2.5
3,042,063 + -0.1
3,042,063 + -0.9
3,042,063 + +0.4
3,042,063 + +0.0
3,042,064 - +0.1
3,042,064 - +1.4
3,042,064 - -1.0
3,042,064 - +0.9
3,042,064 - +0.2
3,042,072 + +0.2
3,042,164 - -0.4
3,042,164 - -0.2
3,042,168 - +0.2

Or see this region's nucleotide sequence