Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03965 and SMc03966 are separated by 171 nucleotides SMc03966 and SMc03967 are separated by 74 nucleotides SMc03967 and SMc03968 are separated by 168 nucleotides
SMc03965: SMc03965 - Holliday junction DNA helicase RuvB, at 2,958,876 to 2,959,916
SMc03965
SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705
SMc03966
SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292
SMc03967
SMc03968: SMc03968 - oxidoreductase, at 2,961,461 to 2,962,450
SMc03968
Position (kb)
2960
2961
2962 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2959.950 kb on + strand at 2960.046 kb on + strand at 2960.551 kb on + strand, within SMc03966 at 2960.765 kb on - strand at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967 at 2961.420 kb on - strand at 2962.059 kb on + strand, within SMc03968 at 2962.059 kb on + strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.292 kb on + strand, within SMc03968
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,959,950 + -1.5 2,960,046 + -1.7 2,960,551 + SMc03966 0.75 -0.2 2,960,765 - +1.2 2,960,911 + SMc03967 0.26 -2.9 2,960,911 + SMc03967 0.26 +1.3 2,960,911 + SMc03967 0.26 +0.3 2,961,420 - -0.7 2,962,059 + SMc03968 0.60 +0.4 2,962,059 + SMc03968 0.60 +0.4 2,962,060 - SMc03968 0.61 -0.1 2,962,060 - SMc03968 0.61 -0.2 2,962,060 - SMc03968 0.61 -0.5 2,962,292 + SMc03968 0.84 +2.3
Or see this region's nucleotide sequence