Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03964 and SMc03965 are separated by 1 nucleotides SMc03965 and SMc03966 are separated by 171 nucleotides SMc03966 and SMc03967 are separated by 74 nucleotides
SMc03964: SMc03964 - hypothetical protein, at 2,957,972 to 2,958,874
SMc03964
SMc03965: SMc03965 - Holliday junction DNA helicase RuvB, at 2,958,876 to 2,959,916
SMc03965
SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705
SMc03966
SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292
SMc03967
Position (kb)
2958
2959
2960 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2958.080 kb on - strand, within SMc03964 at 2958.080 kb on - strand, within SMc03964 at 2958.080 kb on - strand, within SMc03964 at 2958.080 kb on - strand, within SMc03964 at 2958.087 kb on + strand, within SMc03964 at 2958.087 kb on + strand, within SMc03964 at 2958.088 kb on - strand, within SMc03964 at 2958.171 kb on - strand, within SMc03964 at 2958.230 kb on + strand, within SMc03964 at 2958.230 kb on + strand, within SMc03964 at 2958.567 kb on + strand, within SMc03964 at 2958.568 kb on - strand, within SMc03964 at 2958.568 kb on - strand, within SMc03964 at 2958.598 kb on - strand, within SMc03964 at 2958.650 kb on + strand, within SMc03964 at 2958.651 kb on - strand, within SMc03964 at 2958.651 kb on - strand, within SMc03964 at 2958.759 kb on + strand, within SMc03964 at 2958.805 kb on - strand at 2959.950 kb on + strand at 2960.046 kb on + strand at 2960.551 kb on + strand, within SMc03966 at 2960.765 kb on - strand at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,958,080 - SMc03964 0.12 -2.8 2,958,080 - SMc03964 0.12 +0.2 2,958,080 - SMc03964 0.12 +0.7 2,958,080 - SMc03964 0.12 -0.1 2,958,087 + SMc03964 0.13 +0.1 2,958,087 + SMc03964 0.13 -1.3 2,958,088 - SMc03964 0.13 +0.4 2,958,171 - SMc03964 0.22 +0.3 2,958,230 + SMc03964 0.29 -1.2 2,958,230 + SMc03964 0.29 +1.0 2,958,567 + SMc03964 0.66 -0.2 2,958,568 - SMc03964 0.66 -0.5 2,958,568 - SMc03964 0.66 -1.0 2,958,598 - SMc03964 0.69 -0.0 2,958,650 + SMc03964 0.75 +0.1 2,958,651 - SMc03964 0.75 -1.1 2,958,651 - SMc03964 0.75 -0.9 2,958,759 + SMc03964 0.87 -0.2 2,958,805 - -0.9 2,959,950 + -1.5 2,960,046 + -1.7 2,960,551 + SMc03966 0.75 -0.2 2,960,765 - +1.2 2,960,911 + SMc03967 0.26 -2.9 2,960,911 + SMc03967 0.26 +1.3 2,960,911 + SMc03967 0.26 +0.3
Or see this region's nucleotide sequence