Strain Fitness in Sinorhizobium meliloti 1021 around SMc03807

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03805 and SMc03806 are separated by 236 nucleotidesSMc03806 and SMc03807 are separated by 27 nucleotidesSMc03807 and SMc03808 are separated by 328 nucleotides SMc03805: SMc03805 - acyl-CoA thioesterase II, at 3,470,120 to 3,471,004 SMc03805 SMc03806: SMc03806 - nitrogen regulatory protein PII 2, at 3,471,241 to 3,471,579 SMc03806 SMc03807: SMc03807 - ammonium transporter, at 3,471,607 to 3,472,962 SMc03807 SMc03808: SMc03808 - cell division transmembrane protein, at 3,473,291 to 3,475,936 SMc03808 Position (kb) 3471 3472 3473Strain fitness (log2 ratio) -2 -1 0 1at 3470.639 kb on + strand, within SMc03805at 3470.640 kb on - strand, within SMc03805at 3470.640 kb on - strand, within SMc03805at 3470.676 kb on + strand, within SMc03805at 3470.877 kb on - strand, within SMc03805at 3470.877 kb on - strand, within SMc03805at 3470.877 kb on - strand, within SMc03805at 3470.877 kb on - strand, within SMc03805at 3470.879 kb on - strand, within SMc03805at 3470.879 kb on - strand, within SMc03805at 3470.879 kb on - strand, within SMc03805at 3470.879 kb on - strand, within SMc03805at 3471.157 kb on + strandat 3471.261 kb on + strandat 3471.262 kb on - strandat 3471.392 kb on - strand, within SMc03806at 3471.412 kb on - strand, within SMc03806at 3471.412 kb on - strand, within SMc03806at 3471.520 kb on + strand, within SMc03806at 3471.521 kb on - strand, within SMc03806at 3471.521 kb on - strand, within SMc03806at 3471.803 kb on + strand, within SMc03807at 3471.809 kb on - strand, within SMc03807at 3471.898 kb on + strand, within SMc03807at 3471.937 kb on + strand, within SMc03807at 3471.938 kb on - strand, within SMc03807at 3472.154 kb on - strand, within SMc03807at 3472.625 kb on - strand, within SMc03807at 3472.660 kb on + strand, within SMc03807at 3472.661 kb on - strand, within SMc03807at 3472.763 kb on - strand, within SMc03807at 3472.858 kb on + strandat 3472.859 kb on - strandat 3473.065 kb on + strandat 3473.066 kb on - strandat 3473.066 kb on - strandat 3473.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,470,639 + SMc03805 0.59 +0.0
3,470,640 - SMc03805 0.59 -0.5
3,470,640 - SMc03805 0.59 +0.8
3,470,676 + SMc03805 0.63 -1.9
3,470,877 - SMc03805 0.86 +0.7
3,470,877 - SMc03805 0.86 +0.1
3,470,877 - SMc03805 0.86 +1.0
3,470,877 - SMc03805 0.86 +0.4
3,470,879 - SMc03805 0.86 +0.4
3,470,879 - SMc03805 0.86 +0.5
3,470,879 - SMc03805 0.86 -0.5
3,470,879 - SMc03805 0.86 -0.4
3,471,157 + +0.4
3,471,261 + -0.9
3,471,262 - -0.2
3,471,392 - SMc03806 0.45 -0.1
3,471,412 - SMc03806 0.50 +0.7
3,471,412 - SMc03806 0.50 -0.1
3,471,520 + SMc03806 0.82 -1.2
3,471,521 - SMc03806 0.83 +0.4
3,471,521 - SMc03806 0.83 +0.6
3,471,803 + SMc03807 0.14 -0.5
3,471,809 - SMc03807 0.15 -0.2
3,471,898 + SMc03807 0.21 -0.4
3,471,937 + SMc03807 0.24 -1.2
3,471,938 - SMc03807 0.24 -0.4
3,472,154 - SMc03807 0.40 +0.2
3,472,625 - SMc03807 0.75 -0.5
3,472,660 + SMc03807 0.78 -1.2
3,472,661 - SMc03807 0.78 -1.2
3,472,763 - SMc03807 0.85 -0.6
3,472,858 + -2.2
3,472,859 - -0.0
3,473,065 + -0.2
3,473,066 - -0.9
3,473,066 - +0.4
3,473,117 + -0.9

Or see this region's nucleotide sequence