Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03790 and SMc03791 are separated by 169 nucleotides SMc03791 and SMc03792 are separated by 84 nucleotides SMc03792 and SMc03793 overlap by 4 nucleotides SMc03793 and SMc03794 are separated by 121 nucleotides SMc03794 and SMc03795 are separated by 147 nucleotides
SMc03790: SMc03790 - hypothetical protein, at 3,457,313 to 3,458,266
SMc03790
SMc03791: SMc03791 - hypothetical protein, at 3,458,436 to 3,458,870
SMc03791
SMc03792: SMc03792 - hypothetical protein, at 3,458,955 to 3,459,161
SMc03792
SMc03793: SMc03793 - citrate lyase subunit beta, at 3,459,158 to 3,460,060
SMc03793
SMc03794: SMc03794 - hypothetical protein, at 3,460,182 to 3,460,433
SMc03794
SMc03795: SMc03795 - isopropylmalate isomerase small subunit, at 3,460,581 to 3,461,186
SMc03795
Position (kb)
3459
3460
3461 Strain fitness (log2 ratio)
-2
-1
0
1 at 3458.410 kb on + strand at 3458.412 kb on + strand at 3458.413 kb on - strand at 3458.413 kb on - strand at 3458.413 kb on - strand at 3458.495 kb on - strand, within SMc03791 at 3458.520 kb on + strand, within SMc03791 at 3458.521 kb on - strand, within SMc03791 at 3458.521 kb on - strand, within SMc03791 at 3458.521 kb on - strand, within SMc03791 at 3458.521 kb on - strand, within SMc03791 at 3458.769 kb on - strand, within SMc03791 at 3458.769 kb on - strand, within SMc03791 at 3458.986 kb on + strand, within SMc03792 at 3458.987 kb on - strand, within SMc03792 at 3459.058 kb on + strand, within SMc03792 at 3459.059 kb on - strand, within SMc03792 at 3459.532 kb on - strand, within SMc03793 at 3459.532 kb on - strand, within SMc03793 at 3459.532 kb on - strand, within SMc03793 at 3459.740 kb on - strand, within SMc03793 at 3460.432 kb on - strand at 3460.457 kb on - strand at 3460.538 kb on + strand at 3460.723 kb on - strand, within SMc03795 at 3460.902 kb on + strand, within SMc03795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,458,410 + -0.1 3,458,412 + +1.1 3,458,413 - +0.6 3,458,413 - -1.4 3,458,413 - +0.7 3,458,495 - SMc03791 0.14 -0.3 3,458,520 + SMc03791 0.19 -0.2 3,458,521 - SMc03791 0.20 +1.4 3,458,521 - SMc03791 0.20 +0.4 3,458,521 - SMc03791 0.20 +0.5 3,458,521 - SMc03791 0.20 +0.8 3,458,769 - SMc03791 0.77 -1.0 3,458,769 - SMc03791 0.77 +0.1 3,458,986 + SMc03792 0.15 -0.3 3,458,987 - SMc03792 0.15 +0.1 3,459,058 + SMc03792 0.50 -1.0 3,459,059 - SMc03792 0.50 -0.7 3,459,532 - SMc03793 0.41 -0.4 3,459,532 - SMc03793 0.41 -0.2 3,459,532 - SMc03793 0.41 -2.4 3,459,740 - SMc03793 0.64 -0.6 3,460,432 - -0.8 3,460,457 - -0.4 3,460,538 + -0.2 3,460,723 - SMc03795 0.23 -1.8 3,460,902 + SMc03795 0.53 -1.4
Or see this region's nucleotide sequence