Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03776 and SMc03777 overlap by 8 nucleotides SMc03777 and SMc03778 are separated by 35 nucleotides SMc03778 and SMc03780 are separated by 44 nucleotides
SMc03776: SMc03776 - gamma-glutamyl kinase, at 3,442,200 to 3,443,381
SMc03776
SMc03777: SMc03777 - gamma-glutamyl phosphate reductase, at 3,443,374 to 3,444,657
SMc03777
SMc03778: SMc03778 - nicotinic acid mononucleotide adenylyltransferase, at 3,444,693 to 3,445,280
SMc03778
SMc03780: SMc03780 - hypothetical protein, at 3,445,325 to 3,445,816
SMc03780
Position (kb)
3443
3444
3445 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3442.656 kb on + strand, within SMc03776 at 3442.743 kb on + strand, within SMc03776 at 3442.743 kb on + strand, within SMc03776 at 3442.743 kb on + strand, within SMc03776 at 3442.745 kb on + strand, within SMc03776 at 3443.341 kb on + strand at 3443.342 kb on - strand at 3443.767 kb on + strand, within SMc03777 at 3443.767 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.097 kb on + strand, within SMc03777 at 3444.197 kb on + strand, within SMc03777 at 3444.197 kb on + strand, within SMc03777 at 3444.293 kb on + strand, within SMc03777 at 3444.293 kb on + strand, within SMc03777 at 3444.423 kb on + strand, within SMc03777 at 3445.317 kb on + strand at 3445.336 kb on + strand at 3445.336 kb on + strand at 3445.341 kb on - strand at 3445.510 kb on - strand, within SMc03780 at 3445.510 kb on - strand, within SMc03780 at 3445.532 kb on - strand, within SMc03780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,442,656 + SMc03776 0.39 -0.5 3,442,743 + SMc03776 0.46 -1.6 3,442,743 + SMc03776 0.46 -0.9 3,442,743 + SMc03776 0.46 -1.5 3,442,745 + SMc03776 0.46 -1.6 3,443,341 + -1.2 3,443,342 - -2.6 3,443,767 + SMc03777 0.31 -2.5 3,443,767 + SMc03777 0.31 -2.8 3,444,097 + SMc03777 0.56 -3.4 3,444,097 + SMc03777 0.56 -3.2 3,444,097 + SMc03777 0.56 -3.9 3,444,097 + SMc03777 0.56 -2.1 3,444,097 + SMc03777 0.56 -3.4 3,444,097 + SMc03777 0.56 -2.6 3,444,097 + SMc03777 0.56 -2.0 3,444,097 + SMc03777 0.56 -0.9 3,444,197 + SMc03777 0.64 -3.4 3,444,197 + SMc03777 0.64 +0.4 3,444,293 + SMc03777 0.72 -4.2 3,444,293 + SMc03777 0.72 -0.3 3,444,423 + SMc03777 0.82 -2.3 3,445,317 + -0.7 3,445,336 + +1.0 3,445,336 + -0.4 3,445,341 - -0.6 3,445,510 - SMc03780 0.38 -1.5 3,445,510 - SMc03780 0.38 +0.4 3,445,532 - SMc03780 0.42 +0.4
Or see this region's nucleotide sequence