Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03764 and SMc03765 are separated by 537 nucleotides SMc03765 and SMc03766 are separated by 2 nucleotides
SMc03764: SMc03764 - DNA mismatch endonuclease, patch repair protein, at 3,429,430 to 3,429,867
SMc03764
SMc03765: SMc03765 - hypothetical protein, at 3,430,405 to 3,431,994
SMc03765
SMc03766: SMc03766 - hypothetical protein, at 3,431,997 to 3,432,764
SMc03766
Position (kb)
3430
3431
3432 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3429.612 kb on - strand, within SMc03764 at 3429.612 kb on - strand, within SMc03764 at 3429.679 kb on - strand, within SMc03764 at 3429.679 kb on - strand, within SMc03764 at 3429.679 kb on - strand, within SMc03764 at 3429.828 kb on - strand at 3429.962 kb on + strand at 3429.973 kb on - strand at 3429.973 kb on - strand at 3429.973 kb on - strand at 3430.002 kb on - strand at 3430.042 kb on + strand at 3430.042 kb on + strand at 3430.079 kb on + strand at 3430.079 kb on + strand at 3430.079 kb on + strand at 3430.091 kb on + strand at 3430.109 kb on + strand at 3430.165 kb on + strand at 3430.166 kb on - strand at 3430.166 kb on - strand at 3430.201 kb on - strand at 3430.263 kb on + strand at 3430.263 kb on + strand at 3430.629 kb on - strand, within SMc03765 at 3430.730 kb on - strand, within SMc03765 at 3430.755 kb on + strand, within SMc03765 at 3430.795 kb on + strand, within SMc03765 at 3430.796 kb on - strand, within SMc03765 at 3430.898 kb on + strand, within SMc03765 at 3430.898 kb on + strand, within SMc03765 at 3430.970 kb on + strand, within SMc03765 at 3430.971 kb on - strand, within SMc03765 at 3430.984 kb on + strand, within SMc03765 at 3430.984 kb on + strand, within SMc03765 at 3430.985 kb on - strand, within SMc03765 at 3430.985 kb on - strand, within SMc03765 at 3430.985 kb on - strand, within SMc03765 at 3430.985 kb on - strand, within SMc03765 at 3430.985 kb on - strand, within SMc03765 at 3430.985 kb on - strand, within SMc03765 at 3431.024 kb on - strand, within SMc03765 at 3431.029 kb on + strand, within SMc03765 at 3431.030 kb on - strand, within SMc03765 at 3431.041 kb on - strand, within SMc03765 at 3431.056 kb on + strand, within SMc03765 at 3431.317 kb on + strand, within SMc03765 at 3431.356 kb on - strand, within SMc03765 at 3431.360 kb on + strand, within SMc03765 at 3431.360 kb on + strand, within SMc03765 at 3431.360 kb on + strand, within SMc03765 at 3431.372 kb on + strand, within SMc03765 at 3431.372 kb on + strand, within SMc03765 at 3431.498 kb on - strand, within SMc03765 at 3431.521 kb on + strand, within SMc03765 at 3431.521 kb on + strand, within SMc03765 at 3431.522 kb on - strand, within SMc03765 at 3431.527 kb on + strand, within SMc03765 at 3431.528 kb on - strand, within SMc03765 at 3431.551 kb on - strand, within SMc03765 at 3431.552 kb on + strand, within SMc03765 at 3431.552 kb on + strand, within SMc03765 at 3431.553 kb on - strand, within SMc03765 at 3431.593 kb on + strand, within SMc03765 at 3431.594 kb on - strand, within SMc03765 at 3431.638 kb on + strand, within SMc03765 at 3431.639 kb on - strand, within SMc03765 at 3431.639 kb on - strand, within SMc03765 at 3431.641 kb on + strand, within SMc03765 at 3431.642 kb on - strand, within SMc03765 at 3431.642 kb on - strand, within SMc03765 at 3431.684 kb on + strand, within SMc03765 at 3431.684 kb on + strand, within SMc03765 at 3431.685 kb on - strand, within SMc03765 at 3431.710 kb on - strand, within SMc03765 at 3431.732 kb on + strand, within SMc03765 at 3431.733 kb on - strand, within SMc03765 at 3431.760 kb on + strand, within SMc03765 at 3431.780 kb on + strand, within SMc03765 at 3431.780 kb on + strand, within SMc03765 at 3432.307 kb on + strand, within SMc03766 at 3432.321 kb on - strand, within SMc03766 at 3432.345 kb on + strand, within SMc03766 at 3432.408 kb on - strand, within SMc03766 at 3432.409 kb on + strand, within SMc03766 at 3432.409 kb on + strand, within SMc03766 at 3432.410 kb on - strand, within SMc03766 at 3432.410 kb on - strand, within SMc03766 at 3432.450 kb on + strand, within SMc03766 at 3432.450 kb on + strand, within SMc03766 at 3432.487 kb on + strand, within SMc03766 at 3432.488 kb on - strand, within SMc03766 at 3432.583 kb on - strand, within SMc03766 at 3432.635 kb on + strand, within SMc03766 at 3432.765 kb on - strand at 3432.817 kb on - strand at 3432.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,429,612 - SMc03764 0.42 +0.8 3,429,612 - SMc03764 0.42 -0.1 3,429,679 - SMc03764 0.57 +0.3 3,429,679 - SMc03764 0.57 +1.3 3,429,679 - SMc03764 0.57 +0.3 3,429,828 - +0.7 3,429,962 + +1.1 3,429,973 - +0.9 3,429,973 - -0.4 3,429,973 - +0.1 3,430,002 - +0.2 3,430,042 + +0.5 3,430,042 + +1.0 3,430,079 + +0.2 3,430,079 + -1.4 3,430,079 + +0.6 3,430,091 + -0.7 3,430,109 + +0.6 3,430,165 + -0.6 3,430,166 - +1.5 3,430,166 - +0.8 3,430,201 - +0.2 3,430,263 + -0.2 3,430,263 + +1.6 3,430,629 - SMc03765 0.14 +1.6 3,430,730 - SMc03765 0.20 +0.7 3,430,755 + SMc03765 0.22 +1.8 3,430,795 + SMc03765 0.25 +1.0 3,430,796 - SMc03765 0.25 +0.9 3,430,898 + SMc03765 0.31 +0.1 3,430,898 + SMc03765 0.31 +1.0 3,430,970 + SMc03765 0.36 +2.2 3,430,971 - SMc03765 0.36 +2.3 3,430,984 + SMc03765 0.36 +0.6 3,430,984 + SMc03765 0.36 +1.0 3,430,985 - SMc03765 0.36 +0.7 3,430,985 - SMc03765 0.36 +3.0 3,430,985 - SMc03765 0.36 +2.7 3,430,985 - SMc03765 0.36 +0.5 3,430,985 - SMc03765 0.36 +0.1 3,430,985 - SMc03765 0.36 +1.0 3,431,024 - SMc03765 0.39 +0.6 3,431,029 + SMc03765 0.39 +0.6 3,431,030 - SMc03765 0.39 +0.9 3,431,041 - SMc03765 0.40 +0.8 3,431,056 + SMc03765 0.41 +1.4 3,431,317 + SMc03765 0.57 +1.1 3,431,356 - SMc03765 0.60 +0.4 3,431,360 + SMc03765 0.60 +0.4 3,431,360 + SMc03765 0.60 +0.8 3,431,360 + SMc03765 0.60 +0.7 3,431,372 + SMc03765 0.61 +4.4 3,431,372 + SMc03765 0.61 +0.8 3,431,498 - SMc03765 0.69 +1.2 3,431,521 + SMc03765 0.70 +2.2 3,431,521 + SMc03765 0.70 +1.1 3,431,522 - SMc03765 0.70 +0.3 3,431,527 + SMc03765 0.71 -3.6 3,431,528 - SMc03765 0.71 +2.2 3,431,551 - SMc03765 0.72 +0.6 3,431,552 + SMc03765 0.72 -0.1 3,431,552 + SMc03765 0.72 -1.2 3,431,553 - SMc03765 0.72 +0.7 3,431,593 + SMc03765 0.75 +1.7 3,431,594 - SMc03765 0.75 +0.6 3,431,638 + SMc03765 0.78 +1.9 3,431,639 - SMc03765 0.78 +0.4 3,431,639 - SMc03765 0.78 -0.1 3,431,641 + SMc03765 0.78 +1.0 3,431,642 - SMc03765 0.78 +1.0 3,431,642 - SMc03765 0.78 +0.6 3,431,684 + SMc03765 0.80 +1.0 3,431,684 + SMc03765 0.80 +0.5 3,431,685 - SMc03765 0.81 +2.4 3,431,710 - SMc03765 0.82 +0.2 3,431,732 + SMc03765 0.83 +0.9 3,431,733 - SMc03765 0.84 +0.4 3,431,760 + SMc03765 0.85 -1.2 3,431,780 + SMc03765 0.86 +1.6 3,431,780 + SMc03765 0.86 +5.6 3,432,307 + SMc03766 0.40 +0.7 3,432,321 - SMc03766 0.42 -0.9 3,432,345 + SMc03766 0.45 +1.2 3,432,408 - SMc03766 0.54 +0.4 3,432,409 + SMc03766 0.54 -0.0 3,432,409 + SMc03766 0.54 +2.3 3,432,410 - SMc03766 0.54 +0.9 3,432,410 - SMc03766 0.54 +1.2 3,432,450 + SMc03766 0.59 +0.3 3,432,450 + SMc03766 0.59 +1.2 3,432,487 + SMc03766 0.64 +1.2 3,432,488 - SMc03766 0.64 +0.7 3,432,583 - SMc03766 0.76 +2.0 3,432,635 + SMc03766 0.83 +0.2 3,432,765 - +1.6 3,432,817 - -0.7 3,432,914 + +0.5
Or see this region's nucleotide sequence