Strain Fitness in Sinorhizobium meliloti 1021 around SMc03765

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03764 and SMc03765 are separated by 537 nucleotidesSMc03765 and SMc03766 are separated by 2 nucleotides SMc03764: SMc03764 - DNA mismatch endonuclease, patch repair protein, at 3,429,430 to 3,429,867 SMc03764 SMc03765: SMc03765 - hypothetical protein, at 3,430,405 to 3,431,994 SMc03765 SMc03766: SMc03766 - hypothetical protein, at 3,431,997 to 3,432,764 SMc03766 Position (kb) 3430 3431 3432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3429.612 kb on - strand, within SMc03764at 3429.612 kb on - strand, within SMc03764at 3429.679 kb on - strand, within SMc03764at 3429.679 kb on - strand, within SMc03764at 3429.679 kb on - strand, within SMc03764at 3429.828 kb on - strandat 3429.962 kb on + strandat 3429.973 kb on - strandat 3429.973 kb on - strandat 3429.973 kb on - strandat 3430.002 kb on - strandat 3430.042 kb on + strandat 3430.042 kb on + strandat 3430.079 kb on + strandat 3430.079 kb on + strandat 3430.079 kb on + strandat 3430.091 kb on + strandat 3430.109 kb on + strandat 3430.165 kb on + strandat 3430.166 kb on - strandat 3430.166 kb on - strandat 3430.201 kb on - strandat 3430.263 kb on + strandat 3430.263 kb on + strandat 3430.629 kb on - strand, within SMc03765at 3430.730 kb on - strand, within SMc03765at 3430.755 kb on + strand, within SMc03765at 3430.795 kb on + strand, within SMc03765at 3430.796 kb on - strand, within SMc03765at 3430.898 kb on + strand, within SMc03765at 3430.898 kb on + strand, within SMc03765at 3430.970 kb on + strand, within SMc03765at 3430.971 kb on - strand, within SMc03765at 3430.984 kb on + strand, within SMc03765at 3430.984 kb on + strand, within SMc03765at 3430.985 kb on - strand, within SMc03765at 3430.985 kb on - strand, within SMc03765at 3430.985 kb on - strand, within SMc03765at 3430.985 kb on - strand, within SMc03765at 3430.985 kb on - strand, within SMc03765at 3430.985 kb on - strand, within SMc03765at 3431.024 kb on - strand, within SMc03765at 3431.029 kb on + strand, within SMc03765at 3431.030 kb on - strand, within SMc03765at 3431.041 kb on - strand, within SMc03765at 3431.056 kb on + strand, within SMc03765at 3431.317 kb on + strand, within SMc03765at 3431.356 kb on - strand, within SMc03765at 3431.360 kb on + strand, within SMc03765at 3431.360 kb on + strand, within SMc03765at 3431.360 kb on + strand, within SMc03765at 3431.372 kb on + strand, within SMc03765at 3431.372 kb on + strand, within SMc03765at 3431.498 kb on - strand, within SMc03765at 3431.521 kb on + strand, within SMc03765at 3431.521 kb on + strand, within SMc03765at 3431.522 kb on - strand, within SMc03765at 3431.527 kb on + strand, within SMc03765at 3431.528 kb on - strand, within SMc03765at 3431.551 kb on - strand, within SMc03765at 3431.552 kb on + strand, within SMc03765at 3431.552 kb on + strand, within SMc03765at 3431.553 kb on - strand, within SMc03765at 3431.593 kb on + strand, within SMc03765at 3431.594 kb on - strand, within SMc03765at 3431.638 kb on + strand, within SMc03765at 3431.639 kb on - strand, within SMc03765at 3431.639 kb on - strand, within SMc03765at 3431.641 kb on + strand, within SMc03765at 3431.642 kb on - strand, within SMc03765at 3431.642 kb on - strand, within SMc03765at 3431.684 kb on + strand, within SMc03765at 3431.684 kb on + strand, within SMc03765at 3431.685 kb on - strand, within SMc03765at 3431.710 kb on - strand, within SMc03765at 3431.732 kb on + strand, within SMc03765at 3431.733 kb on - strand, within SMc03765at 3431.760 kb on + strand, within SMc03765at 3431.780 kb on + strand, within SMc03765at 3431.780 kb on + strand, within SMc03765at 3432.307 kb on + strand, within SMc03766at 3432.321 kb on - strand, within SMc03766at 3432.345 kb on + strand, within SMc03766at 3432.408 kb on - strand, within SMc03766at 3432.409 kb on + strand, within SMc03766at 3432.409 kb on + strand, within SMc03766at 3432.410 kb on - strand, within SMc03766at 3432.410 kb on - strand, within SMc03766at 3432.450 kb on + strand, within SMc03766at 3432.450 kb on + strand, within SMc03766at 3432.487 kb on + strand, within SMc03766at 3432.488 kb on - strand, within SMc03766at 3432.583 kb on - strand, within SMc03766at 3432.635 kb on + strand, within SMc03766at 3432.765 kb on - strandat 3432.817 kb on - strandat 3432.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,429,612 - SMc03764 0.42 +0.8
3,429,612 - SMc03764 0.42 -0.1
3,429,679 - SMc03764 0.57 +0.3
3,429,679 - SMc03764 0.57 +1.3
3,429,679 - SMc03764 0.57 +0.3
3,429,828 - +0.7
3,429,962 + +1.1
3,429,973 - +0.9
3,429,973 - -0.4
3,429,973 - +0.1
3,430,002 - +0.2
3,430,042 + +0.5
3,430,042 + +1.0
3,430,079 + +0.2
3,430,079 + -1.4
3,430,079 + +0.6
3,430,091 + -0.7
3,430,109 + +0.6
3,430,165 + -0.6
3,430,166 - +1.5
3,430,166 - +0.8
3,430,201 - +0.2
3,430,263 + -0.2
3,430,263 + +1.6
3,430,629 - SMc03765 0.14 +1.6
3,430,730 - SMc03765 0.20 +0.7
3,430,755 + SMc03765 0.22 +1.8
3,430,795 + SMc03765 0.25 +1.0
3,430,796 - SMc03765 0.25 +0.9
3,430,898 + SMc03765 0.31 +0.1
3,430,898 + SMc03765 0.31 +1.0
3,430,970 + SMc03765 0.36 +2.2
3,430,971 - SMc03765 0.36 +2.3
3,430,984 + SMc03765 0.36 +0.6
3,430,984 + SMc03765 0.36 +1.0
3,430,985 - SMc03765 0.36 +0.7
3,430,985 - SMc03765 0.36 +3.0
3,430,985 - SMc03765 0.36 +2.7
3,430,985 - SMc03765 0.36 +0.5
3,430,985 - SMc03765 0.36 +0.1
3,430,985 - SMc03765 0.36 +1.0
3,431,024 - SMc03765 0.39 +0.6
3,431,029 + SMc03765 0.39 +0.6
3,431,030 - SMc03765 0.39 +0.9
3,431,041 - SMc03765 0.40 +0.8
3,431,056 + SMc03765 0.41 +1.4
3,431,317 + SMc03765 0.57 +1.1
3,431,356 - SMc03765 0.60 +0.4
3,431,360 + SMc03765 0.60 +0.4
3,431,360 + SMc03765 0.60 +0.8
3,431,360 + SMc03765 0.60 +0.7
3,431,372 + SMc03765 0.61 +4.4
3,431,372 + SMc03765 0.61 +0.8
3,431,498 - SMc03765 0.69 +1.2
3,431,521 + SMc03765 0.70 +2.2
3,431,521 + SMc03765 0.70 +1.1
3,431,522 - SMc03765 0.70 +0.3
3,431,527 + SMc03765 0.71 -3.6
3,431,528 - SMc03765 0.71 +2.2
3,431,551 - SMc03765 0.72 +0.6
3,431,552 + SMc03765 0.72 -0.1
3,431,552 + SMc03765 0.72 -1.2
3,431,553 - SMc03765 0.72 +0.7
3,431,593 + SMc03765 0.75 +1.7
3,431,594 - SMc03765 0.75 +0.6
3,431,638 + SMc03765 0.78 +1.9
3,431,639 - SMc03765 0.78 +0.4
3,431,639 - SMc03765 0.78 -0.1
3,431,641 + SMc03765 0.78 +1.0
3,431,642 - SMc03765 0.78 +1.0
3,431,642 - SMc03765 0.78 +0.6
3,431,684 + SMc03765 0.80 +1.0
3,431,684 + SMc03765 0.80 +0.5
3,431,685 - SMc03765 0.81 +2.4
3,431,710 - SMc03765 0.82 +0.2
3,431,732 + SMc03765 0.83 +0.9
3,431,733 - SMc03765 0.84 +0.4
3,431,760 + SMc03765 0.85 -1.2
3,431,780 + SMc03765 0.86 +1.6
3,431,780 + SMc03765 0.86 +5.6
3,432,307 + SMc03766 0.40 +0.7
3,432,321 - SMc03766 0.42 -0.9
3,432,345 + SMc03766 0.45 +1.2
3,432,408 - SMc03766 0.54 +0.4
3,432,409 + SMc03766 0.54 -0.0
3,432,409 + SMc03766 0.54 +2.3
3,432,410 - SMc03766 0.54 +0.9
3,432,410 - SMc03766 0.54 +1.2
3,432,450 + SMc03766 0.59 +0.3
3,432,450 + SMc03766 0.59 +1.2
3,432,487 + SMc03766 0.64 +1.2
3,432,488 - SMc03766 0.64 +0.7
3,432,583 - SMc03766 0.76 +2.0
3,432,635 + SMc03766 0.83 +0.2
3,432,765 - +1.6
3,432,817 - -0.7
3,432,914 + +0.5

Or see this region's nucleotide sequence