Strain Fitness in Sinorhizobium meliloti 1021 around SMc03267

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03267 and SMc03268 overlap by 1 nucleotides SMc03267: SMc03267 - dipeptidase, at 3,383,404 to 3,384,420 SMc03267 SMc03268: SMc03268 - peptide transport system ATP-binding ABC transporter protein, at 3,384,420 to 3,386,297 SMc03268 Position (kb) 3383 3384 3385Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3382.406 kb on - strandat 3382.420 kb on + strandat 3382.436 kb on + strandat 3382.436 kb on + strandat 3382.436 kb on + strandat 3382.437 kb on - strandat 3382.442 kb on - strandat 3382.538 kb on + strandat 3382.538 kb on + strandat 3382.538 kb on + strandat 3382.538 kb on + strandat 3382.539 kb on - strandat 3382.539 kb on - strandat 3382.540 kb on + strandat 3382.540 kb on + strandat 3382.540 kb on + strandat 3382.541 kb on - strandat 3382.693 kb on + strandat 3382.693 kb on + strandat 3382.693 kb on + strandat 3382.693 kb on + strandat 3382.821 kb on - strandat 3382.821 kb on - strandat 3382.866 kb on - strandat 3382.881 kb on + strandat 3382.887 kb on + strandat 3382.887 kb on + strandat 3382.887 kb on + strandat 3382.887 kb on + strandat 3382.887 kb on + strandat 3382.888 kb on - strandat 3382.892 kb on - strandat 3382.948 kb on + strandat 3382.951 kb on + strandat 3382.951 kb on + strandat 3383.027 kb on + strandat 3383.027 kb on + strandat 3383.027 kb on + strandat 3383.028 kb on - strandat 3383.028 kb on - strandat 3383.028 kb on - strandat 3383.028 kb on - strandat 3383.123 kb on + strandat 3383.124 kb on - strandat 3383.124 kb on - strandat 3383.195 kb on + strandat 3383.196 kb on - strandat 3383.247 kb on + strandat 3383.247 kb on + strandat 3383.259 kb on + strandat 3383.260 kb on - strandat 3383.261 kb on + strandat 3383.261 kb on + strandat 3383.261 kb on + strandat 3383.261 kb on + strandat 3383.262 kb on - strandat 3383.262 kb on - strandat 3383.262 kb on - strandat 3383.350 kb on + strandat 3383.476 kb on + strandat 3383.476 kb on + strandat 3383.477 kb on - strandat 3383.477 kb on - strandat 3383.489 kb on - strandat 3383.489 kb on - strandat 3383.505 kb on - strandat 3383.585 kb on - strand, within SMc03267at 3383.585 kb on - strand, within SMc03267at 3383.586 kb on + strand, within SMc03267at 3383.587 kb on - strand, within SMc03267at 3383.587 kb on - strand, within SMc03267at 3383.587 kb on - strand, within SMc03267at 3383.714 kb on + strand, within SMc03267at 3383.715 kb on - strand, within SMc03267at 3383.756 kb on + strand, within SMc03267at 3383.756 kb on + strand, within SMc03267at 3383.757 kb on - strand, within SMc03267at 3383.757 kb on - strand, within SMc03267at 3383.761 kb on + strand, within SMc03267at 3383.761 kb on + strand, within SMc03267at 3383.761 kb on + strand, within SMc03267at 3383.761 kb on + strand, within SMc03267at 3383.761 kb on + strand, within SMc03267at 3383.762 kb on - strand, within SMc03267at 3383.762 kb on - strand, within SMc03267at 3383.762 kb on - strand, within SMc03267at 3383.762 kb on - strand, within SMc03267at 3383.763 kb on + strand, within SMc03267at 3383.763 kb on + strand, within SMc03267at 3383.763 kb on + strand, within SMc03267at 3383.764 kb on - strand, within SMc03267at 3383.776 kb on + strand, within SMc03267at 3383.776 kb on + strand, within SMc03267at 3383.776 kb on + strand, within SMc03267at 3383.776 kb on + strand, within SMc03267at 3383.776 kb on + strand, within SMc03267at 3383.777 kb on - strand, within SMc03267at 3383.777 kb on - strand, within SMc03267at 3383.817 kb on + strand, within SMc03267at 3383.850 kb on - strand, within SMc03267at 3383.850 kb on - strand, within SMc03267at 3383.891 kb on - strand, within SMc03267at 3383.891 kb on - strand, within SMc03267at 3383.982 kb on + strand, within SMc03267at 3383.982 kb on + strand, within SMc03267at 3384.001 kb on - strand, within SMc03267at 3384.029 kb on + strand, within SMc03267at 3384.091 kb on - strand, within SMc03267at 3384.113 kb on + strand, within SMc03267at 3384.113 kb on + strand, within SMc03267at 3384.114 kb on - strand, within SMc03267at 3384.166 kb on + strand, within SMc03267at 3384.177 kb on + strand, within SMc03267at 3384.178 kb on - strand, within SMc03267at 3384.202 kb on - strand, within SMc03267at 3384.260 kb on - strand, within SMc03267at 3384.260 kb on - strand, within SMc03267at 3384.277 kb on + strand, within SMc03267at 3384.278 kb on - strand, within SMc03267at 3384.309 kb on - strand, within SMc03267at 3384.309 kb on - strand, within SMc03267at 3384.346 kb on + strandat 3384.346 kb on + strandat 3384.362 kb on + strandat 3384.363 kb on - strandat 3384.363 kb on - strandat 3384.363 kb on - strandat 3384.363 kb on - strandat 3384.448 kb on + strandat 3384.449 kb on - strandat 3384.457 kb on + strandat 3384.468 kb on + strandat 3384.517 kb on + strandat 3384.517 kb on + strandat 3384.517 kb on + strandat 3384.518 kb on - strandat 3384.518 kb on - strandat 3384.518 kb on - strandat 3384.700 kb on + strand, within SMc03268at 3384.748 kb on + strand, within SMc03268at 3384.748 kb on + strand, within SMc03268at 3384.785 kb on + strand, within SMc03268at 3384.785 kb on + strand, within SMc03268at 3384.785 kb on + strand, within SMc03268at 3384.785 kb on + strand, within SMc03268at 3384.786 kb on - strand, within SMc03268at 3384.786 kb on - strand, within SMc03268at 3384.809 kb on - strand, within SMc03268at 3384.841 kb on + strand, within SMc03268at 3384.842 kb on - strand, within SMc03268at 3384.844 kb on + strand, within SMc03268at 3384.844 kb on + strand, within SMc03268at 3384.845 kb on - strand, within SMc03268at 3384.994 kb on + strand, within SMc03268at 3384.994 kb on + strand, within SMc03268at 3384.994 kb on + strand, within SMc03268at 3385.078 kb on + strand, within SMc03268at 3385.079 kb on - strand, within SMc03268at 3385.173 kb on + strand, within SMc03268at 3385.174 kb on - strand, within SMc03268at 3385.174 kb on - strand, within SMc03268at 3385.174 kb on - strand, within SMc03268at 3385.174 kb on - strand, within SMc03268at 3385.226 kb on + strand, within SMc03268at 3385.227 kb on - strand, within SMc03268at 3385.237 kb on - strand, within SMc03268at 3385.237 kb on - strand, within SMc03268at 3385.367 kb on + strand, within SMc03268at 3385.368 kb on - strand, within SMc03268at 3385.368 kb on - strand, within SMc03268

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,382,406 - -0.7
3,382,420 + -0.4
3,382,436 + -0.2
3,382,436 + +0.1
3,382,436 + +0.5
3,382,437 - +0.1
3,382,442 - +0.2
3,382,538 + +0.9
3,382,538 + +0.3
3,382,538 + -0.3
3,382,538 + -0.0
3,382,539 - +0.4
3,382,539 - -0.5
3,382,540 + -0.6
3,382,540 + -0.1
3,382,540 + +0.5
3,382,541 - +0.7
3,382,693 + -0.4
3,382,693 + -0.1
3,382,693 + +0.9
3,382,693 + +0.7
3,382,821 - +0.2
3,382,821 - -2.0
3,382,866 - +0.8
3,382,881 + -0.4
3,382,887 + +0.9
3,382,887 + +0.3
3,382,887 + +2.1
3,382,887 + +0.6
3,382,887 + +0.9
3,382,888 - -1.4
3,382,892 - -2.0
3,382,948 + +2.1
3,382,951 + +0.8
3,382,951 + -0.2
3,383,027 + +1.4
3,383,027 + +2.5
3,383,027 + +2.5
3,383,028 - -0.0
3,383,028 - -0.7
3,383,028 - -0.6
3,383,028 - -0.6
3,383,123 + +1.2
3,383,124 - +0.3
3,383,124 - +1.5
3,383,195 + +1.6
3,383,196 - -0.0
3,383,247 + +1.6
3,383,247 + +1.2
3,383,259 + +0.3
3,383,260 - +0.3
3,383,261 + +3.2
3,383,261 + +0.6
3,383,261 + -0.1
3,383,261 + +1.8
3,383,262 - -0.0
3,383,262 - -1.9
3,383,262 - +0.6
3,383,350 + +0.5
3,383,476 + +1.5
3,383,476 + -0.2
3,383,477 - +0.4
3,383,477 - +0.9
3,383,489 - +0.8
3,383,489 - +0.2
3,383,505 - +0.1
3,383,585 - SMc03267 0.18 -0.1
3,383,585 - SMc03267 0.18 +0.1
3,383,586 + SMc03267 0.18 +1.4
3,383,587 - SMc03267 0.18 +0.2
3,383,587 - SMc03267 0.18 +0.4
3,383,587 - SMc03267 0.18 +0.3
3,383,714 + SMc03267 0.30 -1.2
3,383,715 - SMc03267 0.31 -1.5
3,383,756 + SMc03267 0.35 +0.7
3,383,756 + SMc03267 0.35 +0.6
3,383,757 - SMc03267 0.35 +0.7
3,383,757 - SMc03267 0.35 +0.7
3,383,761 + SMc03267 0.35 +1.4
3,383,761 + SMc03267 0.35 +0.5
3,383,761 + SMc03267 0.35 +0.3
3,383,761 + SMc03267 0.35 +1.5
3,383,761 + SMc03267 0.35 +0.3
3,383,762 - SMc03267 0.35 +1.3
3,383,762 - SMc03267 0.35 +0.6
3,383,762 - SMc03267 0.35 +0.4
3,383,762 - SMc03267 0.35 +0.0
3,383,763 + SMc03267 0.35 -0.3
3,383,763 + SMc03267 0.35 +0.6
3,383,763 + SMc03267 0.35 +1.1
3,383,764 - SMc03267 0.35 -0.2
3,383,776 + SMc03267 0.37 +1.2
3,383,776 + SMc03267 0.37 +0.4
3,383,776 + SMc03267 0.37 +0.7
3,383,776 + SMc03267 0.37 +0.5
3,383,776 + SMc03267 0.37 +0.9
3,383,777 - SMc03267 0.37 +0.6
3,383,777 - SMc03267 0.37 +1.4
3,383,817 + SMc03267 0.41 +0.3
3,383,850 - SMc03267 0.44 -0.0
3,383,850 - SMc03267 0.44 +0.6
3,383,891 - SMc03267 0.48 -1.9
3,383,891 - SMc03267 0.48 +0.1
3,383,982 + SMc03267 0.57 +0.4
3,383,982 + SMc03267 0.57 +0.7
3,384,001 - SMc03267 0.59 -0.3
3,384,029 + SMc03267 0.61 +0.8
3,384,091 - SMc03267 0.68 +0.4
3,384,113 + SMc03267 0.70 -0.3
3,384,113 + SMc03267 0.70 -0.1
3,384,114 - SMc03267 0.70 +1.4
3,384,166 + SMc03267 0.75 -1.1
3,384,177 + SMc03267 0.76 +0.2
3,384,178 - SMc03267 0.76 -0.6
3,384,202 - SMc03267 0.78 +1.2
3,384,260 - SMc03267 0.84 +0.0
3,384,260 - SMc03267 0.84 +0.5
3,384,277 + SMc03267 0.86 +0.5
3,384,278 - SMc03267 0.86 +0.4
3,384,309 - SMc03267 0.89 +2.1
3,384,309 - SMc03267 0.89 +1.2
3,384,346 + +1.3
3,384,346 + +1.2
3,384,362 + +0.5
3,384,363 - -0.3
3,384,363 - +1.0
3,384,363 - -0.2
3,384,363 - -0.4
3,384,448 + +0.2
3,384,449 - +1.1
3,384,457 + +1.4
3,384,468 + +0.2
3,384,517 + +0.0
3,384,517 + +0.5
3,384,517 + +1.4
3,384,518 - +0.8
3,384,518 - +0.5
3,384,518 - +0.9
3,384,700 + SMc03268 0.15 +2.3
3,384,748 + SMc03268 0.17 -0.7
3,384,748 + SMc03268 0.17 +0.2
3,384,785 + SMc03268 0.19 +0.8
3,384,785 + SMc03268 0.19 +1.2
3,384,785 + SMc03268 0.19 +0.7
3,384,785 + SMc03268 0.19 +1.4
3,384,786 - SMc03268 0.19 -0.3
3,384,786 - SMc03268 0.19 +0.2
3,384,809 - SMc03268 0.21 +0.8
3,384,841 + SMc03268 0.22 +0.2
3,384,842 - SMc03268 0.22 +0.1
3,384,844 + SMc03268 0.23 -1.5
3,384,844 + SMc03268 0.23 +0.9
3,384,845 - SMc03268 0.23 -0.2
3,384,994 + SMc03268 0.31 -1.0
3,384,994 + SMc03268 0.31 +0.7
3,384,994 + SMc03268 0.31 +0.5
3,385,078 + SMc03268 0.35 +3.4
3,385,079 - SMc03268 0.35 +0.9
3,385,173 + SMc03268 0.40 +1.2
3,385,174 - SMc03268 0.40 +1.1
3,385,174 - SMc03268 0.40 +1.5
3,385,174 - SMc03268 0.40 -0.4
3,385,174 - SMc03268 0.40 +1.2
3,385,226 + SMc03268 0.43 +1.8
3,385,227 - SMc03268 0.43 -1.8
3,385,237 - SMc03268 0.44 +1.0
3,385,237 - SMc03268 0.44 +0.6
3,385,367 + SMc03268 0.50 +0.4
3,385,368 - SMc03268 0.50 +1.1
3,385,368 - SMc03268 0.50 +0.2

Or see this region's nucleotide sequence