Strain Fitness in Sinorhizobium meliloti 1021 around SMc03202

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03201 and SMc03202 are separated by 1 nucleotidesSMc03202 and SMc03203 are separated by 3 nucleotides SMc03201: SMc03201 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data), at 3,164,896 to 3,166,128 SMc03201 SMc03202: SMc03202 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data), at 3,166,130 to 3,167,143 SMc03202 SMc03203: SMc03203 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data), at 3,167,147 to 3,168,427 SMc03203 Position (kb) 3166 3167 3168Strain fitness (log2 ratio) -2 -1 0 1 2at 3165.212 kb on - strand, within SMc03201at 3165.292 kb on + strand, within SMc03201at 3165.293 kb on - strand, within SMc03201at 3165.403 kb on + strand, within SMc03201at 3165.403 kb on + strand, within SMc03201at 3165.404 kb on - strand, within SMc03201at 3165.404 kb on - strand, within SMc03201at 3165.404 kb on - strand, within SMc03201at 3165.404 kb on - strand, within SMc03201at 3165.404 kb on - strand, within SMc03201at 3165.457 kb on + strand, within SMc03201at 3165.457 kb on + strand, within SMc03201at 3165.457 kb on + strand, within SMc03201at 3165.457 kb on + strand, within SMc03201at 3165.458 kb on - strand, within SMc03201at 3165.458 kb on - strand, within SMc03201at 3165.586 kb on + strand, within SMc03201at 3165.587 kb on - strand, within SMc03201at 3165.587 kb on - strand, within SMc03201at 3165.587 kb on - strand, within SMc03201at 3165.587 kb on - strand, within SMc03201at 3165.587 kb on - strand, within SMc03201at 3165.742 kb on + strand, within SMc03201at 3165.743 kb on - strand, within SMc03201at 3165.805 kb on + strand, within SMc03201at 3165.805 kb on + strand, within SMc03201at 3165.806 kb on - strand, within SMc03201at 3166.062 kb on - strandat 3166.076 kb on - strandat 3166.096 kb on - strandat 3166.195 kb on + strandat 3166.196 kb on - strandat 3166.385 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.387 kb on + strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.388 kb on - strand, within SMc03202at 3166.517 kb on - strand, within SMc03202at 3166.583 kb on + strand, within SMc03202at 3166.659 kb on - strand, within SMc03202at 3166.659 kb on - strand, within SMc03202at 3166.661 kb on - strand, within SMc03202at 3166.742 kb on + strand, within SMc03202at 3166.743 kb on - strand, within SMc03202at 3166.745 kb on - strand, within SMc03202at 3166.771 kb on - strand, within SMc03202at 3166.806 kb on - strand, within SMc03202at 3166.810 kb on + strand, within SMc03202at 3166.810 kb on + strand, within SMc03202at 3166.810 kb on + strand, within SMc03202at 3166.810 kb on + strand, within SMc03202at 3166.810 kb on + strand, within SMc03202at 3166.811 kb on - strandat 3166.811 kb on - strand, within SMc03202at 3166.811 kb on - strand, within SMc03202at 3166.811 kb on - strand, within SMc03202at 3167.015 kb on + strand, within SMc03202at 3167.015 kb on + strand, within SMc03202at 3167.015 kb on + strand, within SMc03202at 3167.015 kb on + strand, within SMc03202at 3167.015 kb on + strand, within SMc03202at 3167.016 kb on - strand, within SMc03202at 3167.087 kb on + strandat 3167.087 kb on + strandat 3167.088 kb on - strandat 3167.088 kb on - strandat 3167.817 kb on - strand, within SMc03203at 3167.817 kb on - strand, within SMc03203at 3167.817 kb on - strand, within SMc03203at 3167.931 kb on + strand, within SMc03203

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,165,212 - SMc03201 0.26 -0.0
3,165,292 + SMc03201 0.32 +1.1
3,165,293 - SMc03201 0.32 +1.3
3,165,403 + SMc03201 0.41 +1.1
3,165,403 + SMc03201 0.41 +0.6
3,165,404 - SMc03201 0.41 -0.2
3,165,404 - SMc03201 0.41 +0.5
3,165,404 - SMc03201 0.41 +0.6
3,165,404 - SMc03201 0.41 +0.8
3,165,404 - SMc03201 0.41 +0.3
3,165,457 + SMc03201 0.45 +0.1
3,165,457 + SMc03201 0.45 +0.4
3,165,457 + SMc03201 0.45 +0.0
3,165,457 + SMc03201 0.45 -0.4
3,165,458 - SMc03201 0.46 +2.4
3,165,458 - SMc03201 0.46 +0.4
3,165,586 + SMc03201 0.56 -0.3
3,165,587 - SMc03201 0.56 -0.5
3,165,587 - SMc03201 0.56 -1.4
3,165,587 - SMc03201 0.56 -1.0
3,165,587 - SMc03201 0.56 -1.1
3,165,587 - SMc03201 0.56 +0.5
3,165,742 + SMc03201 0.69 -1.5
3,165,743 - SMc03201 0.69 +1.1
3,165,805 + SMc03201 0.74 +0.1
3,165,805 + SMc03201 0.74 -0.9
3,165,806 - SMc03201 0.74 +2.3
3,166,062 - -0.2
3,166,076 - +2.2
3,166,096 - +0.3
3,166,195 + -0.0
3,166,196 - -2.1
3,166,385 + SMc03202 0.25 +0.6
3,166,387 + SMc03202 0.25 +1.4
3,166,387 + SMc03202 0.25 -0.1
3,166,387 + SMc03202 0.25 -0.1
3,166,387 + SMc03202 0.25 -0.3
3,166,387 + SMc03202 0.25 +1.2
3,166,387 + SMc03202 0.25 +0.1
3,166,387 + SMc03202 0.25 -0.1
3,166,387 + SMc03202 0.25 -0.5
3,166,388 - SMc03202 0.25 +1.4
3,166,388 - SMc03202 0.25 +1.4
3,166,388 - SMc03202 0.25 +0.4
3,166,388 - SMc03202 0.25 -1.0
3,166,388 - SMc03202 0.25 -1.9
3,166,388 - SMc03202 0.25 -1.2
3,166,388 - SMc03202 0.25 +0.9
3,166,388 - SMc03202 0.25 +0.6
3,166,388 - SMc03202 0.25 +0.0
3,166,517 - SMc03202 0.38 +0.4
3,166,583 + SMc03202 0.45 -0.5
3,166,659 - SMc03202 0.52 +0.3
3,166,659 - SMc03202 0.52 -0.9
3,166,661 - SMc03202 0.52 +0.7
3,166,742 + SMc03202 0.60 -0.5
3,166,743 - SMc03202 0.60 -0.9
3,166,745 - SMc03202 0.61 +0.4
3,166,771 - SMc03202 0.63 -0.6
3,166,806 - SMc03202 0.67 +1.3
3,166,810 + SMc03202 0.67 +0.3
3,166,810 + SMc03202 0.67 -0.5
3,166,810 + SMc03202 0.67 -1.7
3,166,810 + SMc03202 0.67 +0.9
3,166,810 + SMc03202 0.67 -0.9
3,166,811 - +0.4
3,166,811 - SMc03202 0.67 +0.2
3,166,811 - SMc03202 0.67 +2.3
3,166,811 - SMc03202 0.67 -0.1
3,167,015 + SMc03202 0.87 -0.0
3,167,015 + SMc03202 0.87 +1.4
3,167,015 + SMc03202 0.87 -0.5
3,167,015 + SMc03202 0.87 -0.2
3,167,015 + SMc03202 0.87 -0.1
3,167,016 - SMc03202 0.87 +0.7
3,167,087 + +0.9
3,167,087 + +0.7
3,167,088 - +0.6
3,167,088 - -0.1
3,167,817 - SMc03203 0.52 +0.8
3,167,817 - SMc03203 0.52 +0.4
3,167,817 - SMc03203 0.52 +0.1
3,167,931 + SMc03203 0.61 +0.5

Or see this region's nucleotide sequence