Strain Fitness in Sinorhizobium meliloti 1021 around SMc03049

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03048 and SMc03049 are separated by 2 nucleotidesSMc03049 and SMc03050 are separated by 37 nucleotidesSMc03050 and SMc03051 overlap by 4 nucleotidesSMc03051 and SMc03052 overlap by 10 nucleotides SMc03048: SMc03048 - flagellar hook-associated protein FlgK, at 744,506 to 745,924 SMc03048 SMc03049: SMc03049 - flagellar hook-associated protein FlgL, at 745,927 to 746,964 SMc03049 SMc03050: SMc03050 - flagellar biosynthesis regulatory protein FlaF, at 747,002 to 747,349 SMc03050 SMc03051: SMc03051 - flagellar biosynthesis repressor FlbT, at 747,346 to 747,795 SMc03051 SMc03052: SMc03052 - flagellar basal body rod modification protein, at 747,786 to 748,202 SMc03052 Position (kb) 745 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 745.107 kb on + strand, within SMc03048at 745.123 kb on + strand, within SMc03048at 745.154 kb on - strand, within SMc03048at 745.163 kb on + strand, within SMc03048at 745.164 kb on - strand, within SMc03048at 745.164 kb on - strand, within SMc03048at 745.165 kb on + strand, within SMc03048at 745.165 kb on + strand, within SMc03048at 745.165 kb on + strand, within SMc03048at 745.166 kb on - strand, within SMc03048at 745.232 kb on + strand, within SMc03048at 745.232 kb on + strand, within SMc03048at 745.233 kb on - strand, within SMc03048at 745.240 kb on + strand, within SMc03048at 745.240 kb on + strand, within SMc03048at 745.261 kb on - strand, within SMc03048at 745.261 kb on - strand, within SMc03048at 745.592 kb on + strand, within SMc03048at 745.594 kb on + strand, within SMc03048at 745.594 kb on + strand, within SMc03048at 745.595 kb on - strand, within SMc03048at 745.723 kb on - strand, within SMc03048at 745.853 kb on + strandat 745.853 kb on + strandat 745.853 kb on + strandat 745.854 kb on - strandat 745.854 kb on - strandat 745.854 kb on - strandat 745.854 kb on - strandat 745.854 kb on - strandat 746.115 kb on + strand, within SMc03049at 746.274 kb on - strand, within SMc03049at 746.374 kb on + strand, within SMc03049at 746.374 kb on + strand, within SMc03049at 746.374 kb on + strand, within SMc03049at 746.375 kb on - strand, within SMc03049at 746.375 kb on - strand, within SMc03049at 746.377 kb on - strand, within SMc03049at 746.419 kb on + strand, within SMc03049at 746.419 kb on + strand, within SMc03049at 746.419 kb on + strand, within SMc03049at 746.420 kb on - strand, within SMc03049at 746.420 kb on - strand, within SMc03049at 746.420 kb on - strand, within SMc03049at 746.439 kb on + strand, within SMc03049at 746.440 kb on - strand, within SMc03049at 746.440 kb on - strand, within SMc03049at 746.440 kb on - strand, within SMc03049at 746.440 kb on - strand, within SMc03049at 746.490 kb on + strand, within SMc03049at 746.692 kb on + strand, within SMc03049at 746.693 kb on - strand, within SMc03049at 746.734 kb on - strand, within SMc03049at 746.734 kb on - strand, within SMc03049at 746.797 kb on - strand, within SMc03049at 746.797 kb on - strand, within SMc03049at 746.835 kb on + strand, within SMc03049at 746.835 kb on + strand, within SMc03049at 746.835 kb on + strand, within SMc03049at 746.835 kb on + strand, within SMc03049at 746.835 kb on + strand, within SMc03049at 746.836 kb on - strand, within SMc03049at 746.836 kb on - strand, within SMc03049at 746.836 kb on - strand, within SMc03049at 746.839 kb on - strand, within SMc03049at 746.863 kb on + strandat 746.864 kb on - strandat 746.914 kb on + strandat 746.914 kb on + strandat 746.915 kb on - strandat 746.915 kb on - strandat 746.915 kb on - strandat 746.952 kb on - strandat 746.963 kb on - strandat 746.963 kb on - strandat 746.969 kb on + strandat 747.005 kb on + strandat 747.005 kb on + strandat 747.017 kb on + strandat 747.123 kb on - strand, within SMc03050at 747.123 kb on - strand, within SMc03050at 747.149 kb on + strand, within SMc03050at 747.149 kb on + strand, within SMc03050at 747.318 kb on + strandat 747.318 kb on + strandat 747.318 kb on + strandat 747.318 kb on + strandat 747.319 kb on - strandat 747.319 kb on - strandat 747.363 kb on + strandat 747.363 kb on + strandat 747.364 kb on - strandat 747.364 kb on - strandat 747.396 kb on - strand, within SMc03051at 747.517 kb on + strand, within SMc03051at 747.518 kb on - strand, within SMc03051at 747.726 kb on - strand, within SMc03051at 747.767 kb on + strandat 747.822 kb on + strandat 747.823 kb on - strandat 747.823 kb on - strandat 747.882 kb on + strand, within SMc03052at 747.883 kb on - strand, within SMc03052

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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745,107 + SMc03048 0.42 +0.4
745,123 + SMc03048 0.43 -0.4
745,154 - SMc03048 0.46 -1.0
745,163 + SMc03048 0.46 -1.1
745,164 - SMc03048 0.46 -1.8
745,164 - SMc03048 0.46 -1.3
745,165 + SMc03048 0.46 -1.4
745,165 + SMc03048 0.46 -0.3
745,165 + SMc03048 0.46 -1.6
745,166 - SMc03048 0.47 +0.4
745,232 + SMc03048 0.51 -2.1
745,232 + SMc03048 0.51 -1.3
745,233 - SMc03048 0.51 +3.0
745,240 + SMc03048 0.52 -0.4
745,240 + SMc03048 0.52 -1.3
745,261 - SMc03048 0.53 +2.4
745,261 - SMc03048 0.53 +0.4
745,592 + SMc03048 0.77 +0.3
745,594 + SMc03048 0.77 -1.1
745,594 + SMc03048 0.77 +2.4
745,595 - SMc03048 0.77 -0.3
745,723 - SMc03048 0.86 +0.2
745,853 + -0.8
745,853 + +0.0
745,853 + -1.0
745,854 - -1.0
745,854 - +1.4
745,854 - -0.7
745,854 - -1.1
745,854 - +0.4
746,115 + SMc03049 0.18 -0.2
746,274 - SMc03049 0.33 +1.1
746,374 + SMc03049 0.43 -0.6
746,374 + SMc03049 0.43 -2.4
746,374 + SMc03049 0.43 -0.1
746,375 - SMc03049 0.43 -3.5
746,375 - SMc03049 0.43 -1.6
746,377 - SMc03049 0.43 -1.8
746,419 + SMc03049 0.47 -1.4
746,419 + SMc03049 0.47 -1.4
746,419 + SMc03049 0.47 -1.8
746,420 - SMc03049 0.47 -3.7
746,420 - SMc03049 0.47 -1.2
746,420 - SMc03049 0.47 -2.1
746,439 + SMc03049 0.49 -0.2
746,440 - SMc03049 0.49 -2.4
746,440 - SMc03049 0.49 -1.6
746,440 - SMc03049 0.49 -3.4
746,440 - SMc03049 0.49 -2.5
746,490 + SMc03049 0.54 -1.9
746,692 + SMc03049 0.74 -1.2
746,693 - SMc03049 0.74 +0.3
746,734 - SMc03049 0.78 -1.2
746,734 - SMc03049 0.78 -1.4
746,797 - SMc03049 0.84 +1.4
746,797 - SMc03049 0.84 -0.2
746,835 + SMc03049 0.87 -1.5
746,835 + SMc03049 0.87 +0.7
746,835 + SMc03049 0.87 -0.3
746,835 + SMc03049 0.87 -1.3
746,835 + SMc03049 0.87 -2.1
746,836 - SMc03049 0.88 -1.1
746,836 - SMc03049 0.88 -1.7
746,836 - SMc03049 0.88 -2.4
746,839 - SMc03049 0.88 -1.4
746,863 + +0.1
746,864 - -1.8
746,914 + -2.1
746,914 + -0.1
746,915 - -0.2
746,915 - -1.2
746,915 - -0.6
746,952 - +3.7
746,963 - -1.9
746,963 - -2.1
746,969 + -0.6
747,005 + -1.5
747,005 + +0.4
747,017 + -0.9
747,123 - SMc03050 0.35 -1.8
747,123 - SMc03050 0.35 -1.0
747,149 + SMc03050 0.42 +2.2
747,149 + SMc03050 0.42 -0.7
747,318 + -1.8
747,318 + -0.3
747,318 + -0.7
747,318 + -1.2
747,319 - -1.0
747,319 - -1.5
747,363 + -1.4
747,363 + -1.2
747,364 - -2.1
747,364 - -2.1
747,396 - SMc03051 0.11 -0.1
747,517 + SMc03051 0.38 -0.4
747,518 - SMc03051 0.38 -2.9
747,726 - SMc03051 0.84 -0.1
747,767 + -0.2
747,822 + -0.4
747,823 - -2.1
747,823 - -0.8
747,882 + SMc03052 0.23 -0.0
747,883 - SMc03052 0.23 +0.2

Or see this region's nucleotide sequence