Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03046 and SMc03047 are separated by 90 nucleotides SMc03047 and SMc03048 are separated by 83 nucleotides
SMc03046: SMc03046 - transcriptional regulator, at 742,440 to 743,111
SMc03046
SMc03047: SMc03047 - flagellar hook protein FlgE, at 743,202 to 744,422
SMc03047
SMc03048: SMc03048 - flagellar hook-associated protein FlgK, at 744,506 to 745,924
SMc03048
Position (kb)
743
744
745 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 742.308 kb on + strand at 742.309 kb on - strand at 742.368 kb on + strand at 742.483 kb on - strand at 742.915 kb on - strand, within SMc03046 at 742.915 kb on - strand, within SMc03046 at 742.915 kb on - strand at 742.958 kb on - strand, within SMc03046 at 742.958 kb on - strand, within SMc03046 at 742.971 kb on + strand, within SMc03046 at 742.972 kb on - strand, within SMc03046 at 743.091 kb on + strand at 743.168 kb on + strand at 743.169 kb on - strand at 743.169 kb on - strand at 743.202 kb on - strand at 743.212 kb on - strand at 743.212 kb on - strand at 743.307 kb on + strand at 743.364 kb on + strand, within SMc03047 at 743.365 kb on - strand, within SMc03047 at 743.366 kb on + strand, within SMc03047 at 743.367 kb on - strand, within SMc03047 at 743.380 kb on + strand, within SMc03047 at 743.381 kb on - strand, within SMc03047 at 743.381 kb on - strand, within SMc03047 at 743.381 kb on - strand, within SMc03047 at 743.397 kb on + strand, within SMc03047 at 743.502 kb on + strand, within SMc03047 at 743.502 kb on + strand, within SMc03047 at 743.580 kb on + strand, within SMc03047 at 743.581 kb on - strand, within SMc03047 at 743.587 kb on - strand, within SMc03047 at 743.587 kb on - strand, within SMc03047 at 743.757 kb on + strand, within SMc03047 at 743.757 kb on + strand, within SMc03047 at 743.889 kb on - strand, within SMc03047 at 743.889 kb on - strand, within SMc03047 at 744.108 kb on + strand, within SMc03047 at 744.108 kb on + strand, within SMc03047 at 744.108 kb on + strand, within SMc03047 at 744.109 kb on - strand, within SMc03047 at 744.109 kb on - strand, within SMc03047 at 744.117 kb on + strand, within SMc03047 at 744.208 kb on - strand, within SMc03047 at 744.351 kb on + strand at 744.351 kb on + strand at 744.351 kb on + strand at 744.439 kb on - strand at 744.439 kb on - strand at 744.454 kb on + strand at 744.454 kb on + strand at 744.454 kb on + strand at 744.454 kb on + strand at 744.455 kb on - strand at 744.455 kb on - strand at 744.455 kb on - strand at 744.611 kb on + strand at 744.611 kb on + strand at 744.664 kb on - strand, within SMc03048 at 744.812 kb on + strand, within SMc03048 at 744.812 kb on + strand, within SMc03048 at 744.812 kb on + strand, within SMc03048 at 744.813 kb on - strand, within SMc03048 at 744.813 kb on - strand, within SMc03048 at 745.107 kb on + strand, within SMc03048 at 745.123 kb on + strand, within SMc03048 at 745.154 kb on - strand, within SMc03048 at 745.163 kb on + strand, within SMc03048 at 745.164 kb on - strand, within SMc03048 at 745.164 kb on - strand, within SMc03048 at 745.165 kb on + strand, within SMc03048 at 745.165 kb on + strand, within SMc03048 at 745.165 kb on + strand, within SMc03048 at 745.166 kb on - strand, within SMc03048 at 745.232 kb on + strand, within SMc03048 at 745.232 kb on + strand, within SMc03048 at 745.233 kb on - strand, within SMc03048 at 745.240 kb on + strand, within SMc03048 at 745.240 kb on + strand, within SMc03048 at 745.261 kb on - strand, within SMc03048 at 745.261 kb on - strand, within SMc03048
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 742,308 + -0.1 742,309 - -2.6 742,368 + -1.8 742,483 - -0.4 742,915 - SMc03046 0.71 -1.8 742,915 - SMc03046 0.71 -0.9 742,915 - -0.6 742,958 - SMc03046 0.77 -1.8 742,958 - SMc03046 0.77 -2.8 742,971 + SMc03046 0.79 -2.3 742,972 - SMc03046 0.79 -1.6 743,091 + -1.7 743,168 + -0.7 743,169 - +0.4 743,169 - -3.1 743,202 - -1.2 743,212 - +0.8 743,212 - -1.2 743,307 + -1.0 743,364 + SMc03047 0.13 -1.6 743,365 - SMc03047 0.13 -1.6 743,366 + SMc03047 0.13 -0.0 743,367 - SMc03047 0.14 +0.5 743,380 + SMc03047 0.15 -1.0 743,381 - SMc03047 0.15 -1.3 743,381 - SMc03047 0.15 -1.6 743,381 - SMc03047 0.15 -0.9 743,397 + SMc03047 0.16 -2.0 743,502 + SMc03047 0.25 -0.5 743,502 + SMc03047 0.25 -0.8 743,580 + SMc03047 0.31 -0.8 743,581 - SMc03047 0.31 -1.6 743,587 - SMc03047 0.32 -1.6 743,587 - SMc03047 0.32 -1.3 743,757 + SMc03047 0.45 -1.5 743,757 + SMc03047 0.45 -0.0 743,889 - SMc03047 0.56 -1.2 743,889 - SMc03047 0.56 -1.3 744,108 + SMc03047 0.74 -0.6 744,108 + SMc03047 0.74 -2.9 744,108 + SMc03047 0.74 -0.8 744,109 - SMc03047 0.74 -0.9 744,109 - SMc03047 0.74 -2.9 744,117 + SMc03047 0.75 -0.8 744,208 - SMc03047 0.82 +0.8 744,351 + -1.0 744,351 + +0.4 744,351 + +0.4 744,439 - +0.1 744,439 - -1.2 744,454 + -0.6 744,454 + -1.0 744,454 + -2.2 744,454 + -0.2 744,455 - -2.6 744,455 - -1.3 744,455 - -1.3 744,611 + -0.1 744,611 + -0.6 744,664 - SMc03048 0.11 -0.6 744,812 + SMc03048 0.22 -4.0 744,812 + SMc03048 0.22 -2.3 744,812 + SMc03048 0.22 -1.8 744,813 - SMc03048 0.22 -1.4 744,813 - SMc03048 0.22 -0.2 745,107 + SMc03048 0.42 +0.4 745,123 + SMc03048 0.43 -0.4 745,154 - SMc03048 0.46 -1.0 745,163 + SMc03048 0.46 -1.1 745,164 - SMc03048 0.46 -1.8 745,164 - SMc03048 0.46 -1.3 745,165 + SMc03048 0.46 -1.4 745,165 + SMc03048 0.46 -0.3 745,165 + SMc03048 0.46 -1.6 745,166 - SMc03048 0.47 +0.4 745,232 + SMc03048 0.51 -2.1 745,232 + SMc03048 0.51 -1.3 745,233 - SMc03048 0.51 +3.0 745,240 + SMc03048 0.52 -0.4 745,240 + SMc03048 0.52 -1.3 745,261 - SMc03048 0.53 +2.4 745,261 - SMc03048 0.53 +0.4
Or see this region's nucleotide sequence