Strain Fitness in Sinorhizobium meliloti 1021 around SMc03047

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03046 and SMc03047 are separated by 90 nucleotidesSMc03047 and SMc03048 are separated by 83 nucleotides SMc03046: SMc03046 - transcriptional regulator, at 742,440 to 743,111 SMc03046 SMc03047: SMc03047 - flagellar hook protein FlgE, at 743,202 to 744,422 SMc03047 SMc03048: SMc03048 - flagellar hook-associated protein FlgK, at 744,506 to 745,924 SMc03048 Position (kb) 743 744 745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 742.308 kb on + strandat 742.309 kb on - strandat 742.368 kb on + strandat 742.483 kb on - strandat 742.915 kb on - strand, within SMc03046at 742.915 kb on - strand, within SMc03046at 742.915 kb on - strandat 742.958 kb on - strand, within SMc03046at 742.958 kb on - strand, within SMc03046at 742.971 kb on + strand, within SMc03046at 742.972 kb on - strand, within SMc03046at 743.091 kb on + strandat 743.168 kb on + strandat 743.169 kb on - strandat 743.169 kb on - strandat 743.202 kb on - strandat 743.212 kb on - strandat 743.212 kb on - strandat 743.307 kb on + strandat 743.364 kb on + strand, within SMc03047at 743.365 kb on - strand, within SMc03047at 743.366 kb on + strand, within SMc03047at 743.367 kb on - strand, within SMc03047at 743.380 kb on + strand, within SMc03047at 743.381 kb on - strand, within SMc03047at 743.381 kb on - strand, within SMc03047at 743.381 kb on - strand, within SMc03047at 743.397 kb on + strand, within SMc03047at 743.502 kb on + strand, within SMc03047at 743.502 kb on + strand, within SMc03047at 743.580 kb on + strand, within SMc03047at 743.581 kb on - strand, within SMc03047at 743.587 kb on - strand, within SMc03047at 743.587 kb on - strand, within SMc03047at 743.757 kb on + strand, within SMc03047at 743.757 kb on + strand, within SMc03047at 743.889 kb on - strand, within SMc03047at 743.889 kb on - strand, within SMc03047at 744.108 kb on + strand, within SMc03047at 744.108 kb on + strand, within SMc03047at 744.108 kb on + strand, within SMc03047at 744.109 kb on - strand, within SMc03047at 744.109 kb on - strand, within SMc03047at 744.117 kb on + strand, within SMc03047at 744.208 kb on - strand, within SMc03047at 744.351 kb on + strandat 744.351 kb on + strandat 744.351 kb on + strandat 744.439 kb on - strandat 744.439 kb on - strandat 744.454 kb on + strandat 744.454 kb on + strandat 744.454 kb on + strandat 744.454 kb on + strandat 744.455 kb on - strandat 744.455 kb on - strandat 744.455 kb on - strandat 744.611 kb on + strandat 744.611 kb on + strandat 744.664 kb on - strand, within SMc03048at 744.812 kb on + strand, within SMc03048at 744.812 kb on + strand, within SMc03048at 744.812 kb on + strand, within SMc03048at 744.813 kb on - strand, within SMc03048at 744.813 kb on - strand, within SMc03048at 745.107 kb on + strand, within SMc03048at 745.123 kb on + strand, within SMc03048at 745.154 kb on - strand, within SMc03048at 745.163 kb on + strand, within SMc03048at 745.164 kb on - strand, within SMc03048at 745.164 kb on - strand, within SMc03048at 745.165 kb on + strand, within SMc03048at 745.165 kb on + strand, within SMc03048at 745.165 kb on + strand, within SMc03048at 745.166 kb on - strand, within SMc03048at 745.232 kb on + strand, within SMc03048at 745.232 kb on + strand, within SMc03048at 745.233 kb on - strand, within SMc03048at 745.240 kb on + strand, within SMc03048at 745.240 kb on + strand, within SMc03048at 745.261 kb on - strand, within SMc03048at 745.261 kb on - strand, within SMc03048

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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742,308 + -0.1
742,309 - -2.6
742,368 + -1.8
742,483 - -0.4
742,915 - SMc03046 0.71 -1.8
742,915 - SMc03046 0.71 -0.9
742,915 - -0.6
742,958 - SMc03046 0.77 -1.8
742,958 - SMc03046 0.77 -2.8
742,971 + SMc03046 0.79 -2.3
742,972 - SMc03046 0.79 -1.6
743,091 + -1.7
743,168 + -0.7
743,169 - +0.4
743,169 - -3.1
743,202 - -1.2
743,212 - +0.8
743,212 - -1.2
743,307 + -1.0
743,364 + SMc03047 0.13 -1.6
743,365 - SMc03047 0.13 -1.6
743,366 + SMc03047 0.13 -0.0
743,367 - SMc03047 0.14 +0.5
743,380 + SMc03047 0.15 -1.0
743,381 - SMc03047 0.15 -1.3
743,381 - SMc03047 0.15 -1.6
743,381 - SMc03047 0.15 -0.9
743,397 + SMc03047 0.16 -2.0
743,502 + SMc03047 0.25 -0.5
743,502 + SMc03047 0.25 -0.8
743,580 + SMc03047 0.31 -0.8
743,581 - SMc03047 0.31 -1.6
743,587 - SMc03047 0.32 -1.6
743,587 - SMc03047 0.32 -1.3
743,757 + SMc03047 0.45 -1.5
743,757 + SMc03047 0.45 -0.0
743,889 - SMc03047 0.56 -1.2
743,889 - SMc03047 0.56 -1.3
744,108 + SMc03047 0.74 -0.6
744,108 + SMc03047 0.74 -2.9
744,108 + SMc03047 0.74 -0.8
744,109 - SMc03047 0.74 -0.9
744,109 - SMc03047 0.74 -2.9
744,117 + SMc03047 0.75 -0.8
744,208 - SMc03047 0.82 +0.8
744,351 + -1.0
744,351 + +0.4
744,351 + +0.4
744,439 - +0.1
744,439 - -1.2
744,454 + -0.6
744,454 + -1.0
744,454 + -2.2
744,454 + -0.2
744,455 - -2.6
744,455 - -1.3
744,455 - -1.3
744,611 + -0.1
744,611 + -0.6
744,664 - SMc03048 0.11 -0.6
744,812 + SMc03048 0.22 -4.0
744,812 + SMc03048 0.22 -2.3
744,812 + SMc03048 0.22 -1.8
744,813 - SMc03048 0.22 -1.4
744,813 - SMc03048 0.22 -0.2
745,107 + SMc03048 0.42 +0.4
745,123 + SMc03048 0.43 -0.4
745,154 - SMc03048 0.46 -1.0
745,163 + SMc03048 0.46 -1.1
745,164 - SMc03048 0.46 -1.8
745,164 - SMc03048 0.46 -1.3
745,165 + SMc03048 0.46 -1.4
745,165 + SMc03048 0.46 -0.3
745,165 + SMc03048 0.46 -1.6
745,166 - SMc03048 0.47 +0.4
745,232 + SMc03048 0.51 -2.1
745,232 + SMc03048 0.51 -1.3
745,233 - SMc03048 0.51 +3.0
745,240 + SMc03048 0.52 -0.4
745,240 + SMc03048 0.52 -1.3
745,261 - SMc03048 0.53 +2.4
745,261 - SMc03048 0.53 +0.4

Or see this region's nucleotide sequence