Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03043 and SMc03044 overlap by 4 nucleotides SMc03044 and SMc03045 overlap by 65 nucleotides SMc03045 and SMc03046 are separated by 271 nucleotides
SMc03043: SMc03043 - chemotaxis protein, at 738,938 to 740,242
SMc03043
SMc03044: SMc03044 - chemotaxis protein (motility protein D), at 740,239 to 741,666
SMc03044
SMc03045: SMc03045 - hypothetical protein, at 741,602 to 742,168
SMc03045
SMc03046: SMc03046 - transcriptional regulator, at 742,440 to 743,111
SMc03046
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 739.241 kb on - strand, within SMc03043 at 739.358 kb on + strand, within SMc03043 at 739.359 kb on - strand, within SMc03043 at 739.382 kb on + strand, within SMc03043 at 739.383 kb on - strand, within SMc03043 at 739.383 kb on - strand, within SMc03043 at 739.446 kb on - strand, within SMc03043 at 739.480 kb on - strand, within SMc03043 at 739.553 kb on + strand, within SMc03043 at 739.675 kb on - strand, within SMc03043 at 739.675 kb on - strand, within SMc03043 at 739.712 kb on + strand, within SMc03043 at 739.712 kb on + strand, within SMc03043 at 739.713 kb on - strand, within SMc03043 at 739.835 kb on + strand, within SMc03043 at 740.014 kb on + strand, within SMc03043 at 740.014 kb on + strand, within SMc03043 at 740.015 kb on - strand, within SMc03043 at 740.017 kb on - strand, within SMc03043 at 740.527 kb on + strand, within SMc03044 at 740.703 kb on - strand, within SMc03044 at 740.790 kb on + strand, within SMc03044 at 740.790 kb on + strand, within SMc03044 at 740.791 kb on - strand, within SMc03044 at 740.891 kb on + strand, within SMc03044 at 740.891 kb on + strand, within SMc03044 at 740.900 kb on + strand, within SMc03044 at 741.115 kb on + strand, within SMc03044 at 741.115 kb on + strand, within SMc03044 at 741.116 kb on - strand, within SMc03044 at 741.255 kb on + strand, within SMc03044 at 741.609 kb on + strand at 741.609 kb on + strand at 741.658 kb on + strand at 741.664 kb on + strand at 741.664 kb on + strand at 741.664 kb on + strand at 741.665 kb on - strand at 741.722 kb on + strand, within SMc03045 at 741.747 kb on - strand, within SMc03045 at 741.821 kb on + strand, within SMc03045 at 741.917 kb on + strand, within SMc03045 at 741.918 kb on - strand, within SMc03045 at 741.984 kb on - strand, within SMc03045 at 742.088 kb on + strand, within SMc03045 at 742.089 kb on - strand, within SMc03045 at 742.308 kb on + strand at 742.309 kb on - strand at 742.368 kb on + strand at 742.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 739,241 - SMc03043 0.23 -1.0 739,358 + SMc03043 0.32 +2.4 739,359 - SMc03043 0.32 -0.7 739,382 + SMc03043 0.34 -0.6 739,383 - SMc03043 0.34 +0.1 739,383 - SMc03043 0.34 +0.5 739,446 - SMc03043 0.39 +0.4 739,480 - SMc03043 0.42 +0.2 739,553 + SMc03043 0.47 -0.1 739,675 - SMc03043 0.56 -0.4 739,675 - SMc03043 0.56 -0.1 739,712 + SMc03043 0.59 -1.4 739,712 + SMc03043 0.59 +0.5 739,713 - SMc03043 0.59 -0.3 739,835 + SMc03043 0.69 +0.7 740,014 + SMc03043 0.82 +0.3 740,014 + SMc03043 0.82 +0.3 740,015 - SMc03043 0.83 -0.5 740,017 - SMc03043 0.83 -0.2 740,527 + SMc03044 0.20 -0.7 740,703 - SMc03044 0.32 +0.1 740,790 + SMc03044 0.39 -0.8 740,790 + SMc03044 0.39 +2.0 740,791 - SMc03044 0.39 -0.8 740,891 + SMc03044 0.46 -0.4 740,891 + SMc03044 0.46 +0.9 740,900 + SMc03044 0.46 -1.5 741,115 + SMc03044 0.61 -0.1 741,115 + SMc03044 0.61 -0.8 741,116 - SMc03044 0.61 -0.8 741,255 + SMc03044 0.71 -1.4 741,609 + -2.2 741,609 + +0.0 741,658 + -0.2 741,664 + -0.7 741,664 + +0.5 741,664 + -0.1 741,665 - -0.7 741,722 + SMc03045 0.21 +0.1 741,747 - SMc03045 0.26 -0.0 741,821 + SMc03045 0.39 -1.1 741,917 + SMc03045 0.56 -0.2 741,918 - SMc03045 0.56 -0.6 741,984 - SMc03045 0.67 +0.4 742,088 + SMc03045 0.86 -1.1 742,089 - SMc03045 0.86 +0.6 742,308 + -0.1 742,309 - -2.6 742,368 + -1.8 742,483 - -0.4
Or see this region's nucleotide sequence