Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03038 and SMc03039 are separated by 265 nucleotides SMc03039 and SMc03040 are separated by 317 nucleotides
SMc03038: SMc03038 - flagellin B protein, at 732,812 to 733,996
SMc03038
SMc03039: SMc03039 - flagellin D protein, at 734,262 to 735,467
SMc03039
SMc03040: SMc03040 - flagellin protein, at 735,785 to 736,750
SMc03040
Position (kb) 734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 733.307 kb on + strand, within SMc03038 at 733.315 kb on + strand, within SMc03038 at 733.315 kb on + strand, within SMc03038 at 733.374 kb on - strand, within SMc03038 at 733.374 kb on - strand, within SMc03038 at 733.981 kb on + strand at 733.981 kb on + strand at 733.981 kb on + strand at 733.982 kb on - strand at 733.994 kb on + strand at 734.136 kb on - strand at 734.162 kb on - strand at 734.260 kb on + strand at 734.388 kb on - strand, within SMc03039 at 734.397 kb on + strand, within SMc03039 at 734.493 kb on + strand, within SMc03039 at 734.672 kb on + strand, within SMc03039 at 734.698 kb on + strand, within SMc03039 at 734.754 kb on + strand, within SMc03039 at 734.755 kb on - strand, within SMc03039 at 734.755 kb on - strand, within SMc03039 at 734.821 kb on - strand, within SMc03039 at 734.880 kb on + strand, within SMc03039 at 734.881 kb on - strand, within SMc03039 at 734.981 kb on + strand, within SMc03039 at 734.988 kb on + strand, within SMc03039 at 734.989 kb on - strand, within SMc03039 at 734.991 kb on - strand, within SMc03039 at 735.066 kb on + strand, within SMc03039 at 735.066 kb on + strand, within SMc03039 at 735.066 kb on + strand, within SMc03039 at 735.155 kb on + strand, within SMc03039 at 735.155 kb on + strand, within SMc03039 at 735.583 kb on - strand at 735.583 kb on - strand at 735.604 kb on - strand at 735.850 kb on + strand at 735.851 kb on - strand at 735.851 kb on - strand at 735.921 kb on - strand, within SMc03040 at 736.010 kb on - strand, within SMc03040 at 736.010 kb on - strand, within SMc03040 at 736.017 kb on - strand, within SMc03040 at 736.030 kb on + strand, within SMc03040 at 736.102 kb on + strand, within SMc03040 at 736.102 kb on + strand, within SMc03040 at 736.187 kb on + strand, within SMc03040 at 736.187 kb on + strand, within SMc03040 at 736.187 kb on + strand, within SMc03040 at 736.188 kb on - strand, within SMc03040 at 736.188 kb on - strand, within SMc03040 at 736.189 kb on + strand, within SMc03040 at 736.190 kb on - strand, within SMc03040 at 736.262 kb on - strand, within SMc03040 at 736.281 kb on - strand, within SMc03040 at 736.281 kb on - strand, within SMc03040 at 736.312 kb on - strand, within SMc03040 at 736.312 kb on - strand, within SMc03040 at 736.394 kb on + strand, within SMc03040 at 736.394 kb on + strand, within SMc03040 at 736.395 kb on - strand, within SMc03040 at 736.395 kb on - strand, within SMc03040 at 736.397 kb on + strand, within SMc03040 at 736.398 kb on - strand, within SMc03040 at 736.398 kb on - strand, within SMc03040
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 733,307 + SMc03038 0.42 -0.4 733,315 + SMc03038 0.42 -1.5 733,315 + SMc03038 0.42 -0.3 733,374 - SMc03038 0.47 +0.8 733,374 - SMc03038 0.47 +0.6 733,981 + +0.8 733,981 + +0.5 733,981 + +0.5 733,982 - +2.0 733,994 + +0.3 734,136 - +1.3 734,162 - -0.6 734,260 + -1.3 734,388 - SMc03039 0.10 +0.4 734,397 + SMc03039 0.11 +0.0 734,493 + SMc03039 0.19 +0.1 734,672 + SMc03039 0.34 -0.7 734,698 + SMc03039 0.36 +0.0 734,754 + SMc03039 0.41 -0.3 734,755 - SMc03039 0.41 +0.2 734,755 - SMc03039 0.41 -1.0 734,821 - SMc03039 0.46 +0.4 734,880 + SMc03039 0.51 +1.4 734,881 - SMc03039 0.51 +0.3 734,981 + SMc03039 0.60 -0.8 734,988 + SMc03039 0.60 -0.3 734,989 - SMc03039 0.60 -0.4 734,991 - SMc03039 0.60 -1.4 735,066 + SMc03039 0.67 -0.2 735,066 + SMc03039 0.67 -0.0 735,066 + SMc03039 0.67 +1.7 735,155 + SMc03039 0.74 -0.9 735,155 + SMc03039 0.74 +0.6 735,583 - +0.8 735,583 - -0.6 735,604 - +0.2 735,850 + +0.4 735,851 - -0.2 735,851 - +0.7 735,921 - SMc03040 0.14 -1.1 736,010 - SMc03040 0.23 -1.3 736,010 - SMc03040 0.23 +4.8 736,017 - SMc03040 0.24 +0.2 736,030 + SMc03040 0.25 +0.9 736,102 + SMc03040 0.33 +0.1 736,102 + SMc03040 0.33 -2.2 736,187 + SMc03040 0.42 -0.1 736,187 + SMc03040 0.42 +0.1 736,187 + SMc03040 0.42 +4.2 736,188 - SMc03040 0.42 -0.4 736,188 - SMc03040 0.42 -0.4 736,189 + SMc03040 0.42 +0.3 736,190 - SMc03040 0.42 +0.3 736,262 - SMc03040 0.49 -0.4 736,281 - SMc03040 0.51 +0.0 736,281 - SMc03040 0.51 +0.4 736,312 - SMc03040 0.55 -0.1 736,312 - SMc03040 0.55 -1.1 736,394 + SMc03040 0.63 +0.3 736,394 + SMc03040 0.63 +0.0 736,395 - SMc03040 0.63 +0.5 736,395 - SMc03040 0.63 -1.7 736,397 + SMc03040 0.63 +0.2 736,398 - SMc03040 0.63 -2.7 736,398 - SMc03040 0.63 +0.5
Or see this region's nucleotide sequence