Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03034 and SMc03035 are separated by 15 nucleotides SMc03035 and SMc03036 are separated by 7 nucleotides SMc03036 and SMc03037 are separated by 270 nucleotides
SMc03034: SMc03034 - flagellar basal body L-ring protein, at 729,052 to 729,762
SMc03034
SMc03035: SMc03035 - flagellar transmembrane protein, at 729,778 to 730,269
SMc03035
SMc03036: SMc03036 - flagellar biosynthesis protein FliP, at 730,277 to 731,014
SMc03036
SMc03037: SMc03037 - flagellin A, at 731,285 to 732,469
SMc03037
Position (kb) 730
731
732 Strain fitness (log2 ratio) -2
-1
0
1 at 729.286 kb on - strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.653 kb on - strand, within SMc03034 at 729.653 kb on - strand, within SMc03034 at 729.683 kb on - strand, within SMc03034 at 730.014 kb on + strand at 730.109 kb on + strand, within SMc03035 at 730.129 kb on + strand, within SMc03035 at 730.180 kb on + strand, within SMc03035 at 730.181 kb on - strand, within SMc03035 at 730.300 kb on - strand at 730.531 kb on + strand, within SMc03036 at 730.532 kb on - strand, within SMc03036 at 730.532 kb on - strand, within SMc03036 at 730.568 kb on + strand, within SMc03036 at 730.568 kb on + strand, within SMc03036 at 730.568 kb on + strand, within SMc03036 at 730.568 kb on + strand, within SMc03036 at 730.569 kb on - strand, within SMc03036 at 730.569 kb on - strand, within SMc03036 at 730.569 kb on - strand, within SMc03036 at 730.569 kb on - strand, within SMc03036 at 730.569 kb on - strand, within SMc03036 at 731.247 kb on + strand at 731.284 kb on + strand at 731.330 kb on - strand at 731.780 kb on + strand, within SMc03037 at 731.780 kb on + strand, within SMc03037 at 731.780 kb on + strand, within SMc03037 at 731.781 kb on - strand, within SMc03037 at 731.847 kb on - strand, within SMc03037
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 729,286 - SMc03034 0.33 -0.6 729,296 + SMc03034 0.34 -0.6 729,296 + SMc03034 0.34 -0.6 729,296 + SMc03034 0.34 -0.3 729,296 + SMc03034 0.34 +0.7 729,297 - SMc03034 0.34 -0.9 729,297 - SMc03034 0.34 -1.5 729,653 - SMc03034 0.85 +0.2 729,653 - SMc03034 0.85 +0.4 729,683 - SMc03034 0.89 +0.1 730,014 + -0.6 730,109 + SMc03035 0.67 +0.3 730,129 + SMc03035 0.71 -1.4 730,180 + SMc03035 0.82 +0.8 730,181 - SMc03035 0.82 +0.5 730,300 - -0.7 730,531 + SMc03036 0.34 -0.3 730,532 - SMc03036 0.35 -0.0 730,532 - SMc03036 0.35 +0.1 730,568 + SMc03036 0.39 -0.7 730,568 + SMc03036 0.39 -2.7 730,568 + SMc03036 0.39 -0.7 730,568 + SMc03036 0.39 -0.1 730,569 - SMc03036 0.40 -0.5 730,569 - SMc03036 0.40 -1.8 730,569 - SMc03036 0.40 +0.6 730,569 - SMc03036 0.40 +0.2 730,569 - SMc03036 0.40 -1.3 731,247 + +1.4 731,284 + +0.2 731,330 - -0.0 731,780 + SMc03037 0.42 -0.2 731,780 + SMc03037 0.42 -2.3 731,780 + SMc03037 0.42 -0.4 731,781 - SMc03037 0.42 -0.0 731,847 - SMc03037 0.47 -0.0
Or see this region's nucleotide sequence