Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03019 and SMc03020 are separated by 87 nucleotides SMc03020 and SMc03021 are separated by 19 nucleotides SMc03021 and SMc03022 are separated by 1 nucleotides
SMc03019: SMc03019 - flagellar motor switch protein G, at 717,324 to 718,361
SMc03019
SMc03020: SMc03020 - flagellar motor switch protein, at 718,449 to 719,081
SMc03020
SMc03021: SMc03021 - flagellar motor switch transmembrane protein, at 719,101 to 720,048
SMc03021
SMc03022: SMc03022 - flagellar motor protein MotA, at 720,050 to 720,928
SMc03022
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 718.450 kb on + strand at 719.165 kb on + strand at 719.166 kb on - strand at 719.198 kb on + strand, within SMc03021 at 719.199 kb on - strand, within SMc03021 at 719.199 kb on - strand, within SMc03021 at 719.639 kb on - strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.696 kb on - strand, within SMc03021 at 719.867 kb on + strand, within SMc03021 at 720.186 kb on + strand, within SMc03022 at 720.186 kb on + strand, within SMc03022 at 720.187 kb on - strand, within SMc03022 at 720.216 kb on + strand, within SMc03022 at 720.216 kb on + strand, within SMc03022 at 720.216 kb on + strand at 720.216 kb on + strand, within SMc03022 at 720.444 kb on + strand, within SMc03022 at 720.444 kb on + strand, within SMc03022 at 720.445 kb on - strand, within SMc03022 at 720.543 kb on + strand, within SMc03022 at 720.544 kb on - strand, within SMc03022 at 720.544 kb on - strand, within SMc03022 at 720.681 kb on + strand, within SMc03022 at 720.682 kb on - strand, within SMc03022 at 720.876 kb on + strand at 720.876 kb on + strand at 720.877 kb on - strand at 720.889 kb on + strand at 720.934 kb on + strand at 720.968 kb on + strand at 720.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 718,450 + -0.6 719,165 + -0.1 719,166 - -0.3 719,198 + SMc03021 0.10 -1.5 719,199 - SMc03021 0.10 -0.1 719,199 - SMc03021 0.10 +1.8 719,639 - SMc03021 0.57 -2.8 719,695 + SMc03021 0.63 -1.2 719,695 + SMc03021 0.63 -0.2 719,695 + SMc03021 0.63 +1.4 719,695 + SMc03021 0.63 -0.0 719,695 + SMc03021 0.63 +0.2 719,695 + SMc03021 0.63 +1.8 719,696 - SMc03021 0.63 -0.2 719,867 + SMc03021 0.81 -0.8 720,186 + SMc03022 0.15 -0.1 720,186 + SMc03022 0.15 -1.2 720,187 - SMc03022 0.16 -0.2 720,216 + SMc03022 0.19 -0.0 720,216 + SMc03022 0.19 -0.3 720,216 + +0.4 720,216 + SMc03022 0.19 -0.3 720,444 + SMc03022 0.45 -1.1 720,444 + SMc03022 0.45 -0.5 720,445 - SMc03022 0.45 +0.1 720,543 + SMc03022 0.56 -0.5 720,544 - SMc03022 0.56 -1.1 720,544 - SMc03022 0.56 -0.3 720,681 + SMc03022 0.72 +0.5 720,682 - SMc03022 0.72 -0.6 720,876 + -0.8 720,876 + -0.2 720,877 - -0.8 720,889 + +0.1 720,934 + -0.9 720,968 + -1.6 720,968 + -2.0
Or see this region's nucleotide sequence