Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02978 and SMc02979 are separated by 64 nucleotides SMc02979 and SMc02980 are separated by 78 nucleotides SMc02980 and SMc02981 are separated by 277 nucleotides
SMc02978: SMc02978 - hypothetical protein, at 3,099,540 to 3,100,646
SMc02978
SMc02979: SMc02979 - hypothetical protein, at 3,100,711 to 3,101,700
SMc02979
SMc02980: SMc02980 - hypothetical protein, at 3,101,779 to 3,102,225
SMc02980
SMc02981: SMc02981 - amino acid efflux transmembrane protein, at 3,102,503 to 3,103,138
SMc02981
Position (kb)
3100
3101
3102 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3099.730 kb on - strand, within SMc02978 at 3100.094 kb on + strand, within SMc02978 at 3100.094 kb on + strand, within SMc02978 at 3100.099 kb on - strand, within SMc02978 at 3100.491 kb on + strand, within SMc02978 at 3100.492 kb on - strand, within SMc02978 at 3100.676 kb on - strand at 3100.917 kb on - strand, within SMc02979 at 3100.917 kb on - strand, within SMc02979 at 3100.917 kb on - strand, within SMc02979 at 3101.480 kb on + strand, within SMc02979 at 3101.480 kb on + strand, within SMc02979 at 3101.480 kb on + strand, within SMc02979 at 3101.480 kb on + strand, within SMc02979 at 3101.481 kb on - strand, within SMc02979 at 3101.534 kb on - strand, within SMc02979 at 3102.092 kb on + strand, within SMc02980 at 3102.211 kb on + strand at 3102.211 kb on + strand at 3102.241 kb on + strand at 3102.443 kb on + strand at 3102.443 kb on + strand at 3102.443 kb on + strand at 3102.444 kb on - strand at 3102.444 kb on - strand at 3102.444 kb on - strand at 3102.490 kb on + strand at 3102.643 kb on - strand, within SMc02981
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,099,730 - SMc02978 0.17 -0.7 3,100,094 + SMc02978 0.50 -0.0 3,100,094 + SMc02978 0.50 -0.2 3,100,099 - SMc02978 0.50 +0.8 3,100,491 + SMc02978 0.86 -0.3 3,100,492 - SMc02978 0.86 -0.8 3,100,676 - -0.8 3,100,917 - SMc02979 0.21 -2.8 3,100,917 - SMc02979 0.21 -1.8 3,100,917 - SMc02979 0.21 -1.8 3,101,480 + SMc02979 0.78 -1.2 3,101,480 + SMc02979 0.78 -1.2 3,101,480 + SMc02979 0.78 -0.5 3,101,480 + SMc02979 0.78 -0.3 3,101,481 - SMc02979 0.78 -1.2 3,101,534 - SMc02979 0.83 +0.5 3,102,092 + SMc02980 0.70 +0.5 3,102,211 + -1.1 3,102,211 + -0.4 3,102,241 + -0.8 3,102,443 + +0.6 3,102,443 + +1.5 3,102,443 + +0.0 3,102,444 - +1.0 3,102,444 - +2.3 3,102,444 - +0.4 3,102,490 + +0.3 3,102,643 - SMc02981 0.22 -0.4
Or see this region's nucleotide sequence