Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02906 and SMc02907 are separated by 75 nucleotides SMc02907 and SMc02908 are separated by 50 nucleotides SMc02908 and SMc02909 are separated by 37 nucleotides
SMc02906: SMc02906 - hypothetical protein, at 262,113 to 262,436
SMc02906
SMc02907: SMc02907 - amino acid efflux transmembrane protein, at 262,512 to 263,123
SMc02907
SMc02908: SMc02908 - recombination protein RecR, at 263,174 to 263,779
SMc02908
SMc02909: SMc02909 - transglycosylase transmembrane protein, at 263,817 to 265,055
SMc02909
Position (kb) 263
264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 262.338 kb on - strand, within SMc02906 at 262.477 kb on + strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.667 kb on - strand, within SMc02907 at 262.755 kb on + strand, within SMc02907 at 262.756 kb on - strand, within SMc02907 at 262.865 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.897 kb on - strand, within SMc02907 at 263.129 kb on - strand at 263.338 kb on + strand, within SMc02908 at 263.338 kb on + strand, within SMc02908 at 263.553 kb on + strand, within SMc02908 at 263.553 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.727 kb on - strand at 264.187 kb on - strand, within SMc02909 at 264.187 kb on - strand, within SMc02909 at 264.774 kb on + strand, within SMc02909
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 262,338 - SMc02906 0.69 -0.2 262,477 + -1.4 262,478 - -0.2 262,478 - +1.5 262,478 - +0.5 262,667 - SMc02907 0.25 +0.5 262,755 + SMc02907 0.40 -0.5 262,756 - SMc02907 0.40 +0.4 262,865 + SMc02907 0.58 -0.1 262,896 + SMc02907 0.63 -1.5 262,896 + SMc02907 0.63 -0.4 262,896 + SMc02907 0.63 +1.6 262,897 - SMc02907 0.63 -1.2 263,129 - -0.9 263,338 + SMc02908 0.27 -3.3 263,338 + SMc02908 0.27 -1.7 263,553 + SMc02908 0.63 -3.9 263,553 + SMc02908 0.63 -3.3 263,645 + SMc02908 0.78 -1.7 263,645 + SMc02908 0.78 -0.9 263,645 + SMc02908 0.78 -2.7 263,645 + SMc02908 0.78 -2.3 263,727 - -1.7 264,187 - SMc02909 0.30 -1.4 264,187 - SMc02909 0.30 -0.5 264,774 + SMc02909 0.77 -0.1
Or see this region's nucleotide sequence