Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02849 and SMc02850 are separated by 139 nucleotides SMc02850 and SMc02851 are separated by 472 nucleotides
SMc02849: SMc02849 - 2-hydroxyacid dehydrogenase, at 197,325 to 198,329
SMc02849
SMc02850: SMc02850 - DNA polymerase I, at 198,469 to 201,483
SMc02850
SMc02851: SMc02851 - transcriptional regulator, at 201,956 to 202,399
SMc02851
Position (kb) 198
199
200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.611 kb on + strand, within SMc02849 at 197.791 kb on + strand, within SMc02849 at 197.791 kb on + strand, within SMc02849 at 197.792 kb on - strand, within SMc02849 at 197.792 kb on - strand, within SMc02849 at 197.792 kb on - strand, within SMc02849 at 197.994 kb on + strand, within SMc02849 at 197.994 kb on + strand, within SMc02849 at 197.994 kb on + strand, within SMc02849 at 197.994 kb on + strand, within SMc02849 at 198.042 kb on + strand, within SMc02849 at 198.042 kb on + strand, within SMc02849 at 198.043 kb on - strand, within SMc02849 at 198.043 kb on - strand, within SMc02849 at 198.043 kb on - strand, within SMc02849 at 198.043 kb on - strand, within SMc02849 at 198.213 kb on - strand, within SMc02849 at 198.346 kb on + strand at 198.396 kb on + strand at 198.429 kb on - strand at 198.471 kb on - strand at 198.471 kb on - strand at 198.866 kb on + strand, within SMc02850 at 198.867 kb on - strand, within SMc02850 at 198.896 kb on + strand, within SMc02850 at 199.349 kb on + strand, within SMc02850 at 199.350 kb on - strand, within SMc02850 at 199.695 kb on - strand, within SMc02850 at 199.991 kb on + strand, within SMc02850 at 201.542 kb on + strand at 201.543 kb on - strand at 201.545 kb on + strand at 201.546 kb on - strand at 201.546 kb on - strand at 201.691 kb on + strand at 201.691 kb on + strand at 201.691 kb on + strand at 201.692 kb on - strand at 201.692 kb on - strand at 201.692 kb on - strand at 201.918 kb on + strand at 201.918 kb on + strand at 201.918 kb on + strand at 201.919 kb on - strand at 201.919 kb on - strand at 201.919 kb on - strand at 201.951 kb on + strand at 201.952 kb on - strand at 201.987 kb on - strand at 202.027 kb on - strand, within SMc02851 at 202.086 kb on + strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.159 kb on + strand, within SMc02851 at 202.160 kb on - strand, within SMc02851 at 202.160 kb on - strand, within SMc02851 at 202.234 kb on - strand, within SMc02851 at 202.234 kb on - strand, within SMc02851 at 202.349 kb on + strand, within SMc02851 at 202.349 kb on + strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.352 kb on - strand, within SMc02851 at 202.352 kb on - strand, within SMc02851
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 197,611 + SMc02849 0.28 +0.5 197,791 + SMc02849 0.46 +0.7 197,791 + SMc02849 0.46 -0.7 197,792 - SMc02849 0.46 -0.6 197,792 - SMc02849 0.46 +0.3 197,792 - SMc02849 0.46 +0.1 197,994 + SMc02849 0.67 +0.1 197,994 + SMc02849 0.67 -0.4 197,994 + SMc02849 0.67 -1.0 197,994 + SMc02849 0.67 -0.3 198,042 + SMc02849 0.71 -0.1 198,042 + SMc02849 0.71 -0.4 198,043 - SMc02849 0.71 +0.7 198,043 - SMc02849 0.71 +0.7 198,043 - SMc02849 0.71 +0.3 198,043 - SMc02849 0.71 -0.3 198,213 - SMc02849 0.88 +0.5 198,346 + -0.2 198,396 + -1.4 198,429 - +1.5 198,471 - -0.4 198,471 - +0.0 198,866 + SMc02850 0.13 -3.4 198,867 - SMc02850 0.13 -2.1 198,896 + SMc02850 0.14 -0.9 199,349 + SMc02850 0.29 -1.5 199,350 - SMc02850 0.29 -2.7 199,695 - SMc02850 0.41 -1.9 199,991 + SMc02850 0.50 -0.1 201,542 + +2.0 201,543 - -0.5 201,545 + -0.5 201,546 - -0.3 201,546 - -0.1 201,691 + -0.4 201,691 + +0.0 201,691 + +0.2 201,692 - +0.1 201,692 - -1.9 201,692 - +0.5 201,918 + +2.3 201,918 + +1.5 201,918 + -0.9 201,919 - +0.0 201,919 - +0.8 201,919 - +0.2 201,951 + +0.7 201,952 - +0.7 201,987 - +0.1 202,027 - SMc02851 0.16 +1.0 202,086 + SMc02851 0.29 +0.9 202,087 - SMc02851 0.30 -0.2 202,087 - SMc02851 0.30 +0.2 202,087 - SMc02851 0.30 +0.1 202,159 + SMc02851 0.46 -2.1 202,160 - SMc02851 0.46 +0.3 202,160 - SMc02851 0.46 -1.3 202,234 - SMc02851 0.63 +1.6 202,234 - SMc02851 0.63 -1.1 202,349 + SMc02851 0.89 -1.2 202,349 + SMc02851 0.89 +0.5 202,350 - SMc02851 0.89 +0.1 202,350 - SMc02851 0.89 -0.6 202,350 - SMc02851 0.89 -0.4 202,350 - SMc02851 0.89 -0.8 202,352 - SMc02851 0.89 -0.8 202,352 - SMc02851 0.89 +0.3
Or see this region's nucleotide sequence