Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02791 and SMc02790 overlap by 4 nucleotides SMc02790 and SMc02789 are separated by 193 nucleotides SMc02789 and SMc02788 are separated by 105 nucleotides SMc02788 and SMc02787 are separated by 167 nucleotides
SMc02791: SMc02791 - shikimate 5-dehydrogenase, at 1,939 to 2,799
SMc02791
SMc02790: SMc02790 - dephospho-CoA kinase, at 2,796 to 3,380
SMc02790
SMc02789: SMc02789 - DNA polymerase III subunit epsilon, at 3,574 to 4,302
SMc02789
SMc02788: SMc02788 - preprotein translocase subunit SecB, at 4,408 to 4,914
SMc02788
SMc02787: SMc02787 - hypothetical protein, at 5,082 to 5,657
SMc02787
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.438 kb on + strand at 3.438 kb on + strand at 3.439 kb on - strand at 3.439 kb on - strand at 3.464 kb on - strand at 4.300 kb on + strand at 4.300 kb on + strand at 4.300 kb on + strand at 4.307 kb on - strand at 4.351 kb on - strand at 4.959 kb on - strand at 4.972 kb on - strand at 4.972 kb on - strand at 4.972 kb on - strand at 5.035 kb on + strand at 5.036 kb on - strand at 5.036 kb on - strand at 5.038 kb on + strand at 5.038 kb on + strand at 5.039 kb on - strand at 5.039 kb on - strand at 5.039 kb on - strand at 5.040 kb on + strand at 5.281 kb on + strand, within SMc02787 at 5.281 kb on + strand, within SMc02787 at 5.281 kb on + strand, within SMc02787 at 5.282 kb on - strand, within SMc02787 at 5.282 kb on - strand, within SMc02787
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,438 + -2.5 3,438 + +0.2 3,439 - +0.7 3,439 - +0.4 3,464 - +1.0 4,300 + +0.6 4,300 + -0.8 4,300 + +0.1 4,307 - +0.3 4,351 - +0.1 4,959 - -1.0 4,972 - -0.9 4,972 - +0.4 4,972 - -1.0 5,035 + +0.7 5,036 - +0.5 5,036 - +1.5 5,038 + +0.1 5,038 + -2.8 5,039 - -0.8 5,039 - -0.2 5,039 - -0.4 5,040 + -0.7 5,281 + SMc02787 0.35 +1.1 5,281 + SMc02787 0.35 -1.5 5,281 + SMc02787 0.35 -0.5 5,282 - SMc02787 0.35 +1.8 5,282 - SMc02787 0.35 +0.4
Or see this region's nucleotide sequence