Strain Fitness in Sinorhizobium meliloti 1021 around SMc02736

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02735 and SMc02736 are separated by 160 nucleotidesSMc02736 and SMc02737 are separated by 286 nucleotides SMc02735: SMc02735 - hypothetical protein, at 2,589,020 to 2,590,108 SMc02735 SMc02736: SMc02736 - thymidine kinase, at 2,590,269 to 2,590,856 SMc02736 SMc02737: SMc02737 - glycine betaine-binding ABC transporter protein, at 2,591,143 to 2,592,099 SMc02737 Position (kb) 2590 2591Strain fitness (log2 ratio) -2 -1 0 1at 2589.301 kb on - strand, within SMc02735at 2589.409 kb on - strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.664 kb on - strand, within SMc02735at 2589.834 kb on + strand, within SMc02735at 2589.835 kb on - strand, within SMc02735at 2590.171 kb on + strandat 2590.172 kb on - strandat 2590.172 kb on - strandat 2590.172 kb on - strandat 2590.172 kb on - strandat 2590.172 kb on - strandat 2590.172 kb on - strandat 2590.173 kb on + strandat 2590.173 kb on + strandat 2590.176 kb on - strandat 2590.176 kb on - strandat 2590.186 kb on + strandat 2590.309 kb on + strandat 2590.318 kb on + strandat 2590.318 kb on + strandat 2590.510 kb on + strand, within SMc02736at 2590.510 kb on + strandat 2590.746 kb on + strand, within SMc02736at 2590.746 kb on + strand, within SMc02736at 2590.747 kb on - strand, within SMc02736at 2590.780 kb on + strand, within SMc02736at 2590.780 kb on + strandat 2590.781 kb on - strand, within SMc02736at 2590.781 kb on - strand, within SMc02736at 2590.786 kb on + strand, within SMc02736at 2590.834 kb on + strandat 2590.834 kb on + strandat 2590.835 kb on - strandat 2590.835 kb on - strandat 2590.885 kb on - strandat 2591.046 kb on - strandat 2591.056 kb on + strandat 2591.056 kb on + strandat 2591.056 kb on + strandat 2591.066 kb on + strandat 2591.147 kb on + strandat 2591.366 kb on - strand, within SMc02737at 2591.455 kb on - strand, within SMc02737at 2591.497 kb on + strand, within SMc02737at 2591.590 kb on + strand, within SMc02737at 2591.817 kb on - strand, within SMc02737at 2591.817 kb on - strand, within SMc02737at 2591.831 kb on - strand, within SMc02737

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,589,301 - SMc02735 0.26 -0.2
2,589,409 - SMc02735 0.36 +0.1
2,589,663 + SMc02735 0.59 -0.2
2,589,663 + SMc02735 0.59 -0.4
2,589,663 + SMc02735 0.59 -0.2
2,589,663 + SMc02735 0.59 +0.4
2,589,664 - SMc02735 0.59 -0.5
2,589,834 + SMc02735 0.75 -0.3
2,589,835 - SMc02735 0.75 +1.6
2,590,171 + +0.5
2,590,172 - +1.4
2,590,172 - -0.5
2,590,172 - +0.5
2,590,172 - -0.9
2,590,172 - -0.2
2,590,172 - +0.0
2,590,173 + +0.4
2,590,173 + -1.4
2,590,176 - +0.2
2,590,176 - -1.3
2,590,186 + -2.3
2,590,309 + +1.3
2,590,318 + +0.4
2,590,318 + -0.6
2,590,510 + SMc02736 0.41 -0.2
2,590,510 + +1.2
2,590,746 + SMc02736 0.81 +0.0
2,590,746 + SMc02736 0.81 -0.6
2,590,747 - SMc02736 0.81 -0.8
2,590,780 + SMc02736 0.87 -2.6
2,590,780 + -0.8
2,590,781 - SMc02736 0.87 +0.2
2,590,781 - SMc02736 0.87 -0.1
2,590,786 + SMc02736 0.88 -1.9
2,590,834 + +0.1
2,590,834 + -0.2
2,590,835 - +0.0
2,590,835 - +1.0
2,590,885 - -0.9
2,591,046 - +0.3
2,591,056 + +0.5
2,591,056 + +0.3
2,591,056 + -0.5
2,591,066 + +0.2
2,591,147 + -1.0
2,591,366 - SMc02737 0.23 +0.8
2,591,455 - SMc02737 0.33 +0.5
2,591,497 + SMc02737 0.37 -0.5
2,591,590 + SMc02737 0.47 -0.8
2,591,817 - SMc02737 0.70 +0.0
2,591,817 - SMc02737 0.70 +0.4
2,591,831 - SMc02737 0.72 +1.2

Or see this region's nucleotide sequence