Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02735 and SMc02736 are separated by 160 nucleotides SMc02736 and SMc02737 are separated by 286 nucleotides
SMc02735: SMc02735 - hypothetical protein, at 2,589,020 to 2,590,108
SMc02735
SMc02736: SMc02736 - thymidine kinase, at 2,590,269 to 2,590,856
SMc02736
SMc02737: SMc02737 - glycine betaine-binding ABC transporter protein, at 2,591,143 to 2,592,099
SMc02737
Position (kb)
2590
2591 Strain fitness (log2 ratio)
-2
-1
0
1 at 2589.301 kb on - strand, within SMc02735 at 2589.409 kb on - strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.664 kb on - strand, within SMc02735 at 2589.834 kb on + strand, within SMc02735 at 2589.835 kb on - strand, within SMc02735 at 2590.171 kb on + strand at 2590.172 kb on - strand at 2590.172 kb on - strand at 2590.172 kb on - strand at 2590.172 kb on - strand at 2590.172 kb on - strand at 2590.172 kb on - strand at 2590.173 kb on + strand at 2590.173 kb on + strand at 2590.176 kb on - strand at 2590.176 kb on - strand at 2590.186 kb on + strand at 2590.309 kb on + strand at 2590.318 kb on + strand at 2590.318 kb on + strand at 2590.510 kb on + strand, within SMc02736 at 2590.510 kb on + strand at 2590.746 kb on + strand, within SMc02736 at 2590.746 kb on + strand, within SMc02736 at 2590.747 kb on - strand, within SMc02736 at 2590.780 kb on + strand, within SMc02736 at 2590.780 kb on + strand at 2590.781 kb on - strand, within SMc02736 at 2590.781 kb on - strand, within SMc02736 at 2590.786 kb on + strand, within SMc02736 at 2590.834 kb on + strand at 2590.834 kb on + strand at 2590.835 kb on - strand at 2590.835 kb on - strand at 2590.885 kb on - strand at 2591.046 kb on - strand at 2591.056 kb on + strand at 2591.056 kb on + strand at 2591.056 kb on + strand at 2591.066 kb on + strand at 2591.147 kb on + strand at 2591.366 kb on - strand, within SMc02737 at 2591.455 kb on - strand, within SMc02737 at 2591.497 kb on + strand, within SMc02737 at 2591.590 kb on + strand, within SMc02737 at 2591.817 kb on - strand, within SMc02737 at 2591.817 kb on - strand, within SMc02737 at 2591.831 kb on - strand, within SMc02737
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,589,301 - SMc02735 0.26 -0.2 2,589,409 - SMc02735 0.36 +0.1 2,589,663 + SMc02735 0.59 -0.2 2,589,663 + SMc02735 0.59 -0.4 2,589,663 + SMc02735 0.59 -0.2 2,589,663 + SMc02735 0.59 +0.4 2,589,664 - SMc02735 0.59 -0.5 2,589,834 + SMc02735 0.75 -0.3 2,589,835 - SMc02735 0.75 +1.6 2,590,171 + +0.5 2,590,172 - +1.4 2,590,172 - -0.5 2,590,172 - +0.5 2,590,172 - -0.9 2,590,172 - -0.2 2,590,172 - +0.0 2,590,173 + +0.4 2,590,173 + -1.4 2,590,176 - +0.2 2,590,176 - -1.3 2,590,186 + -2.3 2,590,309 + +1.3 2,590,318 + +0.4 2,590,318 + -0.6 2,590,510 + SMc02736 0.41 -0.2 2,590,510 + +1.2 2,590,746 + SMc02736 0.81 +0.0 2,590,746 + SMc02736 0.81 -0.6 2,590,747 - SMc02736 0.81 -0.8 2,590,780 + SMc02736 0.87 -2.6 2,590,780 + -0.8 2,590,781 - SMc02736 0.87 +0.2 2,590,781 - SMc02736 0.87 -0.1 2,590,786 + SMc02736 0.88 -1.9 2,590,834 + +0.1 2,590,834 + -0.2 2,590,835 - +0.0 2,590,835 - +1.0 2,590,885 - -0.9 2,591,046 - +0.3 2,591,056 + +0.5 2,591,056 + +0.3 2,591,056 + -0.5 2,591,066 + +0.2 2,591,147 + -1.0 2,591,366 - SMc02737 0.23 +0.8 2,591,455 - SMc02737 0.33 +0.5 2,591,497 + SMc02737 0.37 -0.5 2,591,590 + SMc02737 0.47 -0.8 2,591,817 - SMc02737 0.70 +0.0 2,591,817 - SMc02737 0.70 +0.4 2,591,831 - SMc02737 0.72 +1.2
Or see this region's nucleotide sequence