Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02714 and SMc02715 are separated by 122 nucleotides SMc02715 and SMc02716 overlap by 4 nucleotides SMc02716 and SMc02717 are separated by 137 nucleotides SMc02717 and SMc02718 are separated by 100 nucleotides SMc02718 and SMc02719 are separated by 233 nucleotides
SMc02714: SMc02714 - hypothetical protein, at 2,563,208 to 2,564,035
SMc02714
SMc02715: SMc02715 - hypothetical protein, at 2,564,158 to 2,564,586
SMc02715
SMc02716: SMc02716 - hypothetical protein, at 2,564,583 to 2,564,834
SMc02716
SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681
SMc02717
SMc02718: SMc02718 - hypothetical protein, at 2,566,782 to 2,566,919
SMc02718
SMc02719: SMc02719 - transposase, at 2,567,153 to 2,568,304
SMc02719
Position (kb)
2564
2565
2566
2567 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2564.086 kb on + strand at 2564.086 kb on + strand at 2564.087 kb on - strand at 2564.087 kb on - strand at 2564.106 kb on + strand at 2564.107 kb on - strand at 2564.159 kb on + strand at 2564.195 kb on + strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.612 kb on + strand, within SMc02716 at 2564.613 kb on - strand, within SMc02716 at 2564.613 kb on - strand, within SMc02716 at 2564.650 kb on - strand, within SMc02716 at 2564.772 kb on + strand, within SMc02716 at 2564.825 kb on - strand at 2564.860 kb on + strand at 2564.860 kb on + strand at 2564.861 kb on - strand at 2564.861 kb on - strand at 2564.861 kb on - strand at 2564.863 kb on - strand at 2564.888 kb on - strand at 2565.145 kb on - strand, within SMc02717 at 2565.175 kb on - strand, within SMc02717 at 2565.348 kb on + strand, within SMc02717 at 2565.349 kb on - strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.464 kb on - strand, within SMc02717 at 2565.466 kb on + strand, within SMc02717 at 2565.468 kb on + strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.484 kb on + strand, within SMc02717 at 2565.486 kb on + strand, within SMc02717 at 2565.486 kb on + strand, within SMc02717 at 2565.487 kb on - strand, within SMc02717 at 2565.537 kb on + strand, within SMc02717 at 2565.537 kb on + strand, within SMc02717 at 2565.573 kb on + strand, within SMc02717 at 2565.574 kb on - strand, within SMc02717 at 2565.574 kb on - strand, within SMc02717 at 2565.574 kb on - strand, within SMc02717 at 2565.578 kb on + strand, within SMc02717 at 2565.663 kb on + strand, within SMc02717 at 2565.664 kb on - strand, within SMc02717 at 2565.678 kb on - strand, within SMc02717 at 2565.681 kb on + strand, within SMc02717 at 2565.681 kb on + strand, within SMc02717 at 2565.681 kb on + strand, within SMc02717 at 2565.682 kb on - strand, within SMc02717 at 2565.682 kb on - strand, within SMc02717 at 2565.717 kb on + strand, within SMc02717 at 2565.724 kb on - strand, within SMc02717 at 2566.135 kb on - strand, within SMc02717 at 2566.269 kb on + strand, within SMc02717 at 2566.269 kb on + strand, within SMc02717 at 2566.270 kb on - strand, within SMc02717 at 2566.299 kb on - strand, within SMc02717 at 2566.558 kb on + strand at 2566.559 kb on - strand at 2566.559 kb on - strand at 2566.626 kb on + strand at 2566.627 kb on - strand at 2566.709 kb on + strand at 2566.866 kb on + strand, within SMc02718 at 2566.866 kb on + strand, within SMc02718 at 2566.978 kb on + strand at 2566.979 kb on - strand at 2566.980 kb on + strand at 2566.981 kb on - strand at 2567.037 kb on + strand at 2567.038 kb on - strand at 2567.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,564,086 + -0.9 2,564,086 + -0.4 2,564,087 - -0.2 2,564,087 - +1.6 2,564,106 + +1.2 2,564,107 - +0.6 2,564,159 + +0.6 2,564,195 + +0.4 2,564,196 - -0.2 2,564,196 - -0.0 2,564,196 - -1.1 2,564,612 + SMc02716 0.12 +3.2 2,564,613 - SMc02716 0.12 +0.5 2,564,613 - SMc02716 0.12 +0.3 2,564,650 - SMc02716 0.27 +0.7 2,564,772 + SMc02716 0.75 -2.0 2,564,825 - +1.5 2,564,860 + +0.3 2,564,860 + +0.2 2,564,861 - -0.8 2,564,861 - -1.2 2,564,861 - +0.1 2,564,863 - +2.3 2,564,888 - -0.8 2,565,145 - SMc02717 0.10 -3.2 2,565,175 - SMc02717 0.12 -1.1 2,565,348 + SMc02717 0.22 -4.0 2,565,349 - SMc02717 0.22 -2.4 2,565,463 + SMc02717 0.29 -3.2 2,565,463 + SMc02717 0.29 -3.1 2,565,463 + SMc02717 0.29 +0.2 2,565,463 + SMc02717 0.29 -5.2 2,565,464 - SMc02717 0.29 -3.9 2,565,466 + SMc02717 0.29 -4.9 2,565,468 + SMc02717 0.29 -2.9 2,565,469 - SMc02717 0.29 -1.3 2,565,469 - SMc02717 0.29 -2.7 2,565,469 - SMc02717 0.29 -3.4 2,565,469 - SMc02717 0.29 +0.2 2,565,469 - SMc02717 0.29 -4.6 2,565,469 - SMc02717 0.29 -3.8 2,565,484 + SMc02717 0.30 -1.0 2,565,486 + SMc02717 0.30 -5.2 2,565,486 + SMc02717 0.30 -3.7 2,565,487 - SMc02717 0.30 -3.2 2,565,537 + SMc02717 0.33 -3.5 2,565,537 + SMc02717 0.33 -2.3 2,565,573 + SMc02717 0.35 -2.2 2,565,574 - SMc02717 0.35 -0.4 2,565,574 - SMc02717 0.35 -3.6 2,565,574 - SMc02717 0.35 -2.5 2,565,578 + SMc02717 0.35 -4.5 2,565,663 + SMc02717 0.40 -3.6 2,565,664 - SMc02717 0.40 -2.1 2,565,678 - SMc02717 0.41 -2.3 2,565,681 + SMc02717 0.41 +1.2 2,565,681 + SMc02717 0.41 -2.6 2,565,681 + SMc02717 0.41 -3.2 2,565,682 - SMc02717 0.42 -5.0 2,565,682 - SMc02717 0.42 -3.0 2,565,717 + SMc02717 0.44 -2.9 2,565,724 - SMc02717 0.44 -1.9 2,566,135 - SMc02717 0.68 -2.7 2,566,269 + SMc02717 0.76 -2.0 2,566,269 + SMc02717 0.76 -3.7 2,566,270 - SMc02717 0.76 -4.2 2,566,299 - SMc02717 0.78 -0.4 2,566,558 + -2.2 2,566,559 - +0.2 2,566,559 - -4.3 2,566,626 + -1.9 2,566,627 - -2.1 2,566,709 + -4.7 2,566,866 + SMc02718 0.61 -0.4 2,566,866 + SMc02718 0.61 -1.5 2,566,978 + -0.3 2,566,979 - +0.5 2,566,980 + -0.9 2,566,981 - -0.6 2,567,037 + -0.6 2,567,038 - +0.2 2,567,038 - -1.0
Or see this region's nucleotide sequence