Strain Fitness in Sinorhizobium meliloti 1021 around SMc02717

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02714 and SMc02715 are separated by 122 nucleotidesSMc02715 and SMc02716 overlap by 4 nucleotidesSMc02716 and SMc02717 are separated by 137 nucleotidesSMc02717 and SMc02718 are separated by 100 nucleotidesSMc02718 and SMc02719 are separated by 233 nucleotides SMc02714: SMc02714 - hypothetical protein, at 2,563,208 to 2,564,035 SMc02714 SMc02715: SMc02715 - hypothetical protein, at 2,564,158 to 2,564,586 SMc02715 SMc02716: SMc02716 - hypothetical protein, at 2,564,583 to 2,564,834 SMc02716 SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681 SMc02717 SMc02718: SMc02718 - hypothetical protein, at 2,566,782 to 2,566,919 SMc02718 SMc02719: SMc02719 - transposase, at 2,567,153 to 2,568,304 SMc02719 Position (kb) 2564 2565 2566 2567Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2564.086 kb on + strandat 2564.086 kb on + strandat 2564.087 kb on - strandat 2564.087 kb on - strandat 2564.106 kb on + strandat 2564.107 kb on - strandat 2564.159 kb on + strandat 2564.195 kb on + strandat 2564.196 kb on - strandat 2564.196 kb on - strandat 2564.196 kb on - strandat 2564.612 kb on + strand, within SMc02716at 2564.613 kb on - strand, within SMc02716at 2564.613 kb on - strand, within SMc02716at 2564.650 kb on - strand, within SMc02716at 2564.772 kb on + strand, within SMc02716at 2564.825 kb on - strandat 2564.860 kb on + strandat 2564.860 kb on + strandat 2564.861 kb on - strandat 2564.861 kb on - strandat 2564.861 kb on - strandat 2564.863 kb on - strandat 2564.888 kb on - strandat 2565.145 kb on - strand, within SMc02717at 2565.175 kb on - strand, within SMc02717at 2565.348 kb on + strand, within SMc02717at 2565.349 kb on - strand, within SMc02717at 2565.463 kb on + strand, within SMc02717at 2565.463 kb on + strand, within SMc02717at 2565.463 kb on + strand, within SMc02717at 2565.463 kb on + strand, within SMc02717at 2565.464 kb on - strand, within SMc02717at 2565.466 kb on + strand, within SMc02717at 2565.468 kb on + strand, within SMc02717at 2565.469 kb on - strand, within SMc02717at 2565.469 kb on - strand, within SMc02717at 2565.469 kb on - strand, within SMc02717at 2565.469 kb on - strand, within SMc02717at 2565.469 kb on - strand, within SMc02717at 2565.469 kb on - strand, within SMc02717at 2565.484 kb on + strand, within SMc02717at 2565.486 kb on + strand, within SMc02717at 2565.486 kb on + strand, within SMc02717at 2565.487 kb on - strand, within SMc02717at 2565.537 kb on + strand, within SMc02717at 2565.537 kb on + strand, within SMc02717at 2565.573 kb on + strand, within SMc02717at 2565.574 kb on - strand, within SMc02717at 2565.574 kb on - strand, within SMc02717at 2565.574 kb on - strand, within SMc02717at 2565.578 kb on + strand, within SMc02717at 2565.663 kb on + strand, within SMc02717at 2565.664 kb on - strand, within SMc02717at 2565.678 kb on - strand, within SMc02717at 2565.681 kb on + strand, within SMc02717at 2565.681 kb on + strand, within SMc02717at 2565.681 kb on + strand, within SMc02717at 2565.682 kb on - strand, within SMc02717at 2565.682 kb on - strand, within SMc02717at 2565.717 kb on + strand, within SMc02717at 2565.724 kb on - strand, within SMc02717at 2566.135 kb on - strand, within SMc02717at 2566.269 kb on + strand, within SMc02717at 2566.269 kb on + strand, within SMc02717at 2566.270 kb on - strand, within SMc02717at 2566.299 kb on - strand, within SMc02717at 2566.558 kb on + strandat 2566.559 kb on - strandat 2566.559 kb on - strandat 2566.626 kb on + strandat 2566.627 kb on - strandat 2566.709 kb on + strandat 2566.866 kb on + strand, within SMc02718at 2566.866 kb on + strand, within SMc02718at 2566.978 kb on + strandat 2566.979 kb on - strandat 2566.980 kb on + strandat 2566.981 kb on - strandat 2567.037 kb on + strandat 2567.038 kb on - strandat 2567.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,564,086 + -0.9
2,564,086 + -0.4
2,564,087 - -0.2
2,564,087 - +1.6
2,564,106 + +1.2
2,564,107 - +0.6
2,564,159 + +0.6
2,564,195 + +0.4
2,564,196 - -0.2
2,564,196 - -0.0
2,564,196 - -1.1
2,564,612 + SMc02716 0.12 +3.2
2,564,613 - SMc02716 0.12 +0.5
2,564,613 - SMc02716 0.12 +0.3
2,564,650 - SMc02716 0.27 +0.7
2,564,772 + SMc02716 0.75 -2.0
2,564,825 - +1.5
2,564,860 + +0.3
2,564,860 + +0.2
2,564,861 - -0.8
2,564,861 - -1.2
2,564,861 - +0.1
2,564,863 - +2.3
2,564,888 - -0.8
2,565,145 - SMc02717 0.10 -3.2
2,565,175 - SMc02717 0.12 -1.1
2,565,348 + SMc02717 0.22 -4.0
2,565,349 - SMc02717 0.22 -2.4
2,565,463 + SMc02717 0.29 -3.2
2,565,463 + SMc02717 0.29 -3.1
2,565,463 + SMc02717 0.29 +0.2
2,565,463 + SMc02717 0.29 -5.2
2,565,464 - SMc02717 0.29 -3.9
2,565,466 + SMc02717 0.29 -4.9
2,565,468 + SMc02717 0.29 -2.9
2,565,469 - SMc02717 0.29 -1.3
2,565,469 - SMc02717 0.29 -2.7
2,565,469 - SMc02717 0.29 -3.4
2,565,469 - SMc02717 0.29 +0.2
2,565,469 - SMc02717 0.29 -4.6
2,565,469 - SMc02717 0.29 -3.8
2,565,484 + SMc02717 0.30 -1.0
2,565,486 + SMc02717 0.30 -5.2
2,565,486 + SMc02717 0.30 -3.7
2,565,487 - SMc02717 0.30 -3.2
2,565,537 + SMc02717 0.33 -3.5
2,565,537 + SMc02717 0.33 -2.3
2,565,573 + SMc02717 0.35 -2.2
2,565,574 - SMc02717 0.35 -0.4
2,565,574 - SMc02717 0.35 -3.6
2,565,574 - SMc02717 0.35 -2.5
2,565,578 + SMc02717 0.35 -4.5
2,565,663 + SMc02717 0.40 -3.6
2,565,664 - SMc02717 0.40 -2.1
2,565,678 - SMc02717 0.41 -2.3
2,565,681 + SMc02717 0.41 +1.2
2,565,681 + SMc02717 0.41 -2.6
2,565,681 + SMc02717 0.41 -3.2
2,565,682 - SMc02717 0.42 -5.0
2,565,682 - SMc02717 0.42 -3.0
2,565,717 + SMc02717 0.44 -2.9
2,565,724 - SMc02717 0.44 -1.9
2,566,135 - SMc02717 0.68 -2.7
2,566,269 + SMc02717 0.76 -2.0
2,566,269 + SMc02717 0.76 -3.7
2,566,270 - SMc02717 0.76 -4.2
2,566,299 - SMc02717 0.78 -0.4
2,566,558 + -2.2
2,566,559 - +0.2
2,566,559 - -4.3
2,566,626 + -1.9
2,566,627 - -2.1
2,566,709 + -4.7
2,566,866 + SMc02718 0.61 -0.4
2,566,866 + SMc02718 0.61 -1.5
2,566,978 + -0.3
2,566,979 - +0.5
2,566,980 + -0.9
2,566,981 - -0.6
2,567,037 + -0.6
2,567,038 - +0.2
2,567,038 - -1.0

Or see this region's nucleotide sequence