Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02637 and SMc02636 are separated by 5 nucleotides SMc02636 and SMc02635 are separated by 322 nucleotides SMc02635 and SMc02634 are separated by 305 nucleotides
SMc02637: SMc02637 - hypothetical protein, at 1,183,063 to 1,183,425
SMc02637
SMc02636: SMc02636 - hypothetical protein, at 1,183,431 to 1,184,036
SMc02636
SMc02635: SMc02635 - DNA repair protein RecO, at 1,184,359 to 1,185,138
SMc02635
SMc02634: SMc02634 - hypothetical protein, at 1,185,444 to 1,187,447
SMc02634
Position (kb)
1184
1185
1186 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1183.424 kb on - strand at 1183.424 kb on - strand at 1183.424 kb on - strand at 1183.667 kb on - strand, within SMc02636 at 1183.673 kb on - strand, within SMc02636 at 1183.888 kb on + strand, within SMc02636 at 1183.946 kb on - strand, within SMc02636 at 1183.946 kb on - strand, within SMc02636 at 1183.946 kb on - strand, within SMc02636 at 1184.033 kb on - strand at 1184.033 kb on - strand at 1184.033 kb on - strand at 1184.047 kb on + strand at 1184.047 kb on + strand at 1184.171 kb on + strand at 1184.171 kb on + strand at 1184.172 kb on - strand at 1184.217 kb on - strand at 1184.268 kb on + strand at 1184.268 kb on + strand at 1184.268 kb on + strand at 1184.292 kb on + strand at 1184.383 kb on + strand at 1184.383 kb on + strand at 1184.383 kb on + strand at 1184.383 kb on + strand at 1184.383 kb on + strand at 1184.384 kb on - strand at 1184.417 kb on + strand at 1184.418 kb on - strand at 1184.660 kb on - strand, within SMc02635 at 1184.726 kb on - strand, within SMc02635 at 1184.878 kb on + strand, within SMc02635 at 1184.882 kb on + strand, within SMc02635 at 1184.883 kb on - strand, within SMc02635 at 1184.929 kb on + strand, within SMc02635 at 1185.025 kb on + strand, within SMc02635 at 1185.026 kb on - strand, within SMc02635 at 1185.026 kb on - strand, within SMc02635 at 1185.046 kb on + strand, within SMc02635 at 1185.046 kb on + strand, within SMc02635 at 1185.215 kb on - strand at 1185.873 kb on + strand, within SMc02634 at 1185.874 kb on - strand, within SMc02634 at 1186.015 kb on + strand, within SMc02634 at 1186.015 kb on + strand, within SMc02634 at 1186.016 kb on - strand, within SMc02634 at 1186.016 kb on - strand, within SMc02634
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,183,424 - -0.0 1,183,424 - +0.2 1,183,424 - -0.4 1,183,667 - SMc02636 0.39 -0.1 1,183,673 - SMc02636 0.40 -0.5 1,183,888 + SMc02636 0.75 -0.3 1,183,946 - SMc02636 0.85 +0.3 1,183,946 - SMc02636 0.85 +1.3 1,183,946 - SMc02636 0.85 +0.3 1,184,033 - -0.3 1,184,033 - +1.3 1,184,033 - -3.8 1,184,047 + +0.2 1,184,047 + +0.6 1,184,171 + +0.0 1,184,171 + -2.4 1,184,172 - +0.3 1,184,217 - +0.6 1,184,268 + -0.0 1,184,268 + +0.2 1,184,268 + +0.4 1,184,292 + +0.0 1,184,383 + -0.2 1,184,383 + -0.0 1,184,383 + -0.2 1,184,383 + +3.3 1,184,383 + -0.2 1,184,384 - -2.8 1,184,417 + -3.8 1,184,418 - -4.7 1,184,660 - SMc02635 0.39 -1.4 1,184,726 - SMc02635 0.47 -2.9 1,184,878 + SMc02635 0.67 -5.2 1,184,882 + SMc02635 0.67 -4.0 1,184,883 - SMc02635 0.67 -2.9 1,184,929 + SMc02635 0.73 -1.9 1,185,025 + SMc02635 0.85 -3.7 1,185,026 - SMc02635 0.86 -3.2 1,185,026 - SMc02635 0.86 -3.3 1,185,046 + SMc02635 0.88 -2.7 1,185,046 + SMc02635 0.88 -1.7 1,185,215 - +1.3 1,185,873 + SMc02634 0.21 -0.7 1,185,874 - SMc02634 0.21 +0.3 1,186,015 + SMc02634 0.28 +0.6 1,186,015 + SMc02634 0.28 +0.0 1,186,016 - SMc02634 0.29 -0.2 1,186,016 - SMc02634 0.29 +3.6
Or see this region's nucleotide sequence