Strain Fitness in Sinorhizobium meliloti 1021 around SMc02414

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02413 and SMc02414 are separated by 58 nucleotidesSMc02414 and SMc02415 are separated by 188 nucleotides SMc02413: SMc02413 - aminotransferase, at 2,782,766 to 2,784,079 SMc02413 SMc02414: SMc02414 - hydrolase, at 2,784,138 to 2,785,613 SMc02414 SMc02415: SMc02415 - peptide-binding periplasmic ABC transporter protein, at 2,785,802 to 2,787,382 SMc02415 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2783.171 kb on + strand, within SMc02413at 2783.270 kb on + strand, within SMc02413at 2783.270 kb on + strand, within SMc02413at 2783.270 kb on + strand, within SMc02413at 2783.270 kb on + strand, within SMc02413at 2783.271 kb on - strand, within SMc02413at 2783.271 kb on - strand, within SMc02413at 2783.271 kb on - strand, within SMc02413at 2783.271 kb on - strand, within SMc02413at 2783.918 kb on + strand, within SMc02413at 2783.918 kb on + strand, within SMc02413at 2783.918 kb on + strand, within SMc02413at 2783.919 kb on - strand, within SMc02413at 2783.919 kb on - strand, within SMc02413at 2783.922 kb on - strand, within SMc02413at 2783.922 kb on - strand, within SMc02413at 2783.922 kb on - strand, within SMc02413at 2783.922 kb on - strand, within SMc02413at 2783.922 kb on - strand, within SMc02413at 2783.922 kb on - strand, within SMc02413at 2784.001 kb on + strandat 2784.001 kb on + strandat 2784.077 kb on + strandat 2784.283 kb on + strandat 2784.283 kb on + strandat 2784.283 kb on + strandat 2784.283 kb on + strandat 2784.283 kb on + strandat 2784.283 kb on + strandat 2784.283 kb on + strandat 2784.284 kb on - strandat 2784.284 kb on - strandat 2784.284 kb on - strandat 2784.284 kb on - strandat 2784.344 kb on + strand, within SMc02414at 2784.344 kb on + strand, within SMc02414at 2784.438 kb on - strand, within SMc02414at 2784.440 kb on - strand, within SMc02414at 2784.542 kb on + strand, within SMc02414at 2784.544 kb on + strand, within SMc02414at 2784.544 kb on + strand, within SMc02414at 2784.544 kb on + strand, within SMc02414at 2784.544 kb on + strand, within SMc02414at 2784.544 kb on + strand, within SMc02414at 2784.545 kb on - strand, within SMc02414at 2784.545 kb on - strand, within SMc02414at 2784.545 kb on - strand, within SMc02414at 2784.605 kb on + strand, within SMc02414at 2784.828 kb on + strand, within SMc02414at 2784.828 kb on + strand, within SMc02414at 2784.828 kb on + strand, within SMc02414at 2784.828 kb on + strand, within SMc02414at 2784.829 kb on - strand, within SMc02414at 2785.180 kb on + strand, within SMc02414at 2785.180 kb on + strand, within SMc02414at 2785.207 kb on - strand, within SMc02414at 2785.207 kb on - strand, within SMc02414at 2785.303 kb on + strand, within SMc02414at 2785.324 kb on + strand, within SMc02414at 2785.324 kb on + strand, within SMc02414at 2785.324 kb on + strand, within SMc02414at 2785.325 kb on - strand, within SMc02414at 2785.325 kb on - strand, within SMc02414at 2785.330 kb on + strand, within SMc02414at 2785.330 kb on + strand, within SMc02414at 2785.331 kb on - strand, within SMc02414at 2785.334 kb on - strand, within SMc02414at 2785.347 kb on + strand, within SMc02414at 2785.347 kb on + strand, within SMc02414at 2785.347 kb on + strand, within SMc02414at 2785.347 kb on + strand, within SMc02414at 2785.348 kb on - strand, within SMc02414at 2785.348 kb on - strand, within SMc02414at 2785.618 kb on + strandat 2785.619 kb on - strandat 2785.619 kb on - strandat 2785.619 kb on - strandat 2785.748 kb on + strandat 2785.749 kb on - strandat 2785.778 kb on - strandat 2785.916 kb on - strandat 2785.916 kb on - strandat 2785.919 kb on + strandat 2785.919 kb on + strandat 2785.919 kb on + strandat 2785.919 kb on + strandat 2785.920 kb on - strandat 2785.920 kb on - strandat 2785.979 kb on + strand, within SMc02415at 2785.979 kb on + strand, within SMc02415at 2785.979 kb on + strand, within SMc02415at 2785.979 kb on + strand, within SMc02415at 2785.980 kb on - strand, within SMc02415at 2785.980 kb on - strand, within SMc02415at 2785.980 kb on - strand, within SMc02415at 2785.980 kb on - strand, within SMc02415at 2785.980 kb on - strand, within SMc02415at 2785.980 kb on - strand, within SMc02415at 2786.179 kb on + strand, within SMc02415at 2786.190 kb on - strand, within SMc02415at 2786.275 kb on + strand, within SMc02415at 2786.332 kb on + strand, within SMc02415at 2786.333 kb on - strand, within SMc02415at 2786.484 kb on - strand, within SMc02415at 2786.486 kb on - strand, within SMc02415at 2786.486 kb on - strand, within SMc02415at 2786.515 kb on - strand, within SMc02415

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,783,171 + SMc02413 0.31 -2.7
2,783,270 + SMc02413 0.38 +0.2
2,783,270 + SMc02413 0.38 -1.3
2,783,270 + SMc02413 0.38 -0.7
2,783,270 + SMc02413 0.38 +0.3
2,783,271 - SMc02413 0.38 +0.7
2,783,271 - SMc02413 0.38 -0.2
2,783,271 - SMc02413 0.38 -0.7
2,783,271 - SMc02413 0.38 -0.3
2,783,918 + SMc02413 0.88 -0.0
2,783,918 + SMc02413 0.88 -1.4
2,783,918 + SMc02413 0.88 -0.4
2,783,919 - SMc02413 0.88 -3.7
2,783,919 - SMc02413 0.88 -0.2
2,783,922 - SMc02413 0.88 -0.6
2,783,922 - SMc02413 0.88 -0.3
2,783,922 - SMc02413 0.88 +0.4
2,783,922 - SMc02413 0.88 -1.8
2,783,922 - SMc02413 0.88 +0.5
2,783,922 - SMc02413 0.88 +1.4
2,784,001 + -0.3
2,784,001 + -1.4
2,784,077 + +0.1
2,784,283 + +1.0
2,784,283 + -0.3
2,784,283 + -1.3
2,784,283 + +2.0
2,784,283 + -0.3
2,784,283 + +2.0
2,784,283 + -0.3
2,784,284 - -0.1
2,784,284 - -1.2
2,784,284 - -0.4
2,784,284 - -0.3
2,784,344 + SMc02414 0.14 -0.9
2,784,344 + SMc02414 0.14 +0.7
2,784,438 - SMc02414 0.20 +1.0
2,784,440 - SMc02414 0.20 +1.3
2,784,542 + SMc02414 0.27 +1.1
2,784,544 + SMc02414 0.28 -1.1
2,784,544 + SMc02414 0.28 +1.1
2,784,544 + SMc02414 0.28 -0.4
2,784,544 + SMc02414 0.28 -0.5
2,784,544 + SMc02414 0.28 -0.3
2,784,545 - SMc02414 0.28 +0.3
2,784,545 - SMc02414 0.28 -1.0
2,784,545 - SMc02414 0.28 +0.5
2,784,605 + SMc02414 0.32 +2.3
2,784,828 + SMc02414 0.47 -0.0
2,784,828 + SMc02414 0.47 +0.6
2,784,828 + SMc02414 0.47 -0.3
2,784,828 + SMc02414 0.47 -0.3
2,784,829 - SMc02414 0.47 -2.1
2,785,180 + SMc02414 0.71 -0.6
2,785,180 + SMc02414 0.71 -1.1
2,785,207 - SMc02414 0.72 -0.7
2,785,207 - SMc02414 0.72 -0.4
2,785,303 + SMc02414 0.79 +0.1
2,785,324 + SMc02414 0.80 +0.3
2,785,324 + SMc02414 0.80 +0.1
2,785,324 + SMc02414 0.80 -0.9
2,785,325 - SMc02414 0.80 -2.5
2,785,325 - SMc02414 0.80 -0.1
2,785,330 + SMc02414 0.81 +2.3
2,785,330 + SMc02414 0.81 -2.1
2,785,331 - SMc02414 0.81 -1.5
2,785,334 - SMc02414 0.81 -1.1
2,785,347 + SMc02414 0.82 +0.7
2,785,347 + SMc02414 0.82 -0.6
2,785,347 + SMc02414 0.82 -1.9
2,785,347 + SMc02414 0.82 +0.2
2,785,348 - SMc02414 0.82 +0.1
2,785,348 - SMc02414 0.82 -2.2
2,785,618 + +0.8
2,785,619 - -0.3
2,785,619 - -0.4
2,785,619 - +0.2
2,785,748 + -1.1
2,785,749 - -0.6
2,785,778 - +0.3
2,785,916 - -0.3
2,785,916 - +0.2
2,785,919 + -0.4
2,785,919 + -0.7
2,785,919 + +0.4
2,785,919 + -0.3
2,785,920 - -0.7
2,785,920 - +0.1
2,785,979 + SMc02415 0.11 +0.5
2,785,979 + SMc02415 0.11 -0.7
2,785,979 + SMc02415 0.11 -1.7
2,785,979 + SMc02415 0.11 -0.1
2,785,980 - SMc02415 0.11 -2.0
2,785,980 - SMc02415 0.11 -0.1
2,785,980 - SMc02415 0.11 -0.6
2,785,980 - SMc02415 0.11 +1.1
2,785,980 - SMc02415 0.11 +1.9
2,785,980 - SMc02415 0.11 -0.5
2,786,179 + SMc02415 0.24 -0.4
2,786,190 - SMc02415 0.25 -0.5
2,786,275 + SMc02415 0.30 -2.4
2,786,332 + SMc02415 0.34 -0.3
2,786,333 - SMc02415 0.34 -0.8
2,786,484 - SMc02415 0.43 +0.2
2,786,486 - SMc02415 0.43 -0.5
2,786,486 - SMc02415 0.43 +1.3
2,786,515 - SMc02415 0.45 +0.0

Or see this region's nucleotide sequence