Strain Fitness in Sinorhizobium meliloti 1021 around SMc01880

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01881 and SMc01880 are separated by 2 nucleotidesSMc01880 and SMc01879 are separated by 338 nucleotides SMc01881: SMc01881 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 2,325,178 to 2,325,999 SMc01881 SMc01880: SMc01880 - pantoate--beta-alanine ligase, at 2,326,002 to 2,326,877 SMc01880 SMc01879: SMc01879 - hypothetical protein, at 2,327,216 to 2,327,620 SMc01879 Position (kb) 2326 2327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2325.018 kb on + strandat 2325.019 kb on - strandat 2325.134 kb on + strandat 2325.139 kb on + strandat 2325.139 kb on + strandat 2325.139 kb on + strandat 2325.140 kb on - strandat 2325.140 kb on - strandat 2325.140 kb on - strandat 2325.205 kb on + strandat 2325.206 kb on - strandat 2325.833 kb on + strand, within SMc01881at 2325.833 kb on + strand, within SMc01881at 2325.909 kb on + strand, within SMc01881at 2325.909 kb on + strand, within SMc01881at 2325.910 kb on - strand, within SMc01881at 2325.910 kb on - strand, within SMc01881at 2325.912 kb on - strand, within SMc01881at 2326.008 kb on + strandat 2326.009 kb on - strandat 2326.374 kb on - strand, within SMc01880at 2326.583 kb on - strand, within SMc01880at 2326.583 kb on - strand, within SMc01880at 2326.583 kb on - strand, within SMc01880at 2326.666 kb on + strand, within SMc01880at 2326.713 kb on + strand, within SMc01880at 2326.714 kb on - strand, within SMc01880at 2326.784 kb on - strand, within SMc01880at 2326.928 kb on - strandat 2327.042 kb on - strandat 2327.062 kb on - strandat 2327.117 kb on + strandat 2327.117 kb on + strandat 2327.117 kb on + strandat 2327.125 kb on + strandat 2327.126 kb on - strandat 2327.126 kb on - strandat 2327.126 kb on - strandat 2327.347 kb on + strand, within SMc01879at 2327.347 kb on + strand, within SMc01879at 2327.348 kb on - strand, within SMc01879at 2327.348 kb on - strand, within SMc01879at 2327.488 kb on + strand, within SMc01879at 2327.489 kb on - strand, within SMc01879at 2327.540 kb on + strand, within SMc01879at 2327.541 kb on - strand, within SMc01879at 2327.541 kb on - strand, within SMc01879

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,325,018 + -0.4
2,325,019 - +0.1
2,325,134 + -0.4
2,325,139 + -0.8
2,325,139 + -0.1
2,325,139 + +0.1
2,325,140 - +1.3
2,325,140 - -1.1
2,325,140 - -0.2
2,325,205 + -1.0
2,325,206 - -2.4
2,325,833 + SMc01881 0.80 -2.8
2,325,833 + SMc01881 0.80 +3.4
2,325,909 + SMc01881 0.89 -0.9
2,325,909 + SMc01881 0.89 +0.0
2,325,910 - SMc01881 0.89 -1.0
2,325,910 - SMc01881 0.89 -2.2
2,325,912 - SMc01881 0.89 -1.7
2,326,008 + +0.3
2,326,009 - -1.2
2,326,374 - SMc01880 0.42 -1.5
2,326,583 - SMc01880 0.66 -2.1
2,326,583 - SMc01880 0.66 -1.2
2,326,583 - SMc01880 0.66 -1.9
2,326,666 + SMc01880 0.76 -1.2
2,326,713 + SMc01880 0.81 -1.2
2,326,714 - SMc01880 0.81 +1.1
2,326,784 - SMc01880 0.89 +0.1
2,326,928 - -0.2
2,327,042 - -0.3
2,327,062 - +0.3
2,327,117 + -0.3
2,327,117 + +0.9
2,327,117 + -0.2
2,327,125 + -0.2
2,327,126 - -0.3
2,327,126 - +0.5
2,327,126 - +0.4
2,327,347 + SMc01879 0.32 +0.9
2,327,347 + SMc01879 0.32 -0.4
2,327,348 - SMc01879 0.33 +0.1
2,327,348 - SMc01879 0.33 -1.3
2,327,488 + SMc01879 0.67 +0.5
2,327,489 - SMc01879 0.67 -0.6
2,327,540 + SMc01879 0.80 -0.0
2,327,541 - SMc01879 0.80 +0.9
2,327,541 - SMc01879 0.80 -0.1

Or see this region's nucleotide sequence