Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01800 and SMc01801 are separated by 70 nucleotides SMc01801 and SMc01802 are separated by 93 nucleotides
SMc01800: SMc01800 - cytochrome C oxidase assembly transmembrane protein, at 1,346,968 to 1,348,071
SMc01800
SMc01801: SMc01801 - N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) , at 1,348,142 to 1,349,074
SMc01801
SMc01802: SMc01802 - agmatinase, at 1,349,168 to 1,350,124
SMc01802
Position (kb)
1348
1349
1350 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1347.227 kb on - strand, within SMc01800 at 1347.803 kb on - strand, within SMc01800 at 1348.037 kb on - strand at 1348.037 kb on - strand at 1348.055 kb on + strand at 1348.548 kb on + strand, within SMc01801 at 1348.675 kb on + strand, within SMc01801 at 1348.676 kb on - strand, within SMc01801 at 1349.127 kb on + strand at 1349.128 kb on - strand at 1349.212 kb on + strand at 1349.212 kb on + strand at 1349.213 kb on - strand at 1349.213 kb on - strand at 1349.213 kb on - strand at 1349.214 kb on + strand at 1349.214 kb on + strand at 1349.215 kb on - strand at 1349.215 kb on - strand at 1349.215 kb on - strand at 1349.300 kb on - strand, within SMc01802 at 1349.333 kb on + strand, within SMc01802 at 1349.334 kb on - strand, within SMc01802 at 1349.334 kb on - strand, within SMc01802 at 1349.334 kb on - strand, within SMc01802 at 1349.334 kb on - strand, within SMc01802 at 1349.422 kb on - strand, within SMc01802 at 1349.456 kb on - strand, within SMc01802 at 1349.712 kb on + strand, within SMc01802 at 1349.713 kb on - strand, within SMc01802 at 1349.713 kb on - strand, within SMc01802 at 1349.713 kb on - strand, within SMc01802 at 1349.713 kb on - strand, within SMc01802 at 1349.749 kb on - strand, within SMc01802 at 1349.818 kb on - strand, within SMc01802 at 1350.021 kb on + strand, within SMc01802
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,347,227 - SMc01800 0.23 -0.1 1,347,803 - SMc01800 0.76 -1.8 1,348,037 - -1.1 1,348,037 - -1.6 1,348,055 + -0.1 1,348,548 + SMc01801 0.44 -3.6 1,348,675 + SMc01801 0.57 -2.2 1,348,676 - SMc01801 0.57 -4.1 1,349,127 + +0.3 1,349,128 - +0.0 1,349,212 + +1.5 1,349,212 + +0.2 1,349,213 - -2.0 1,349,213 - -0.0 1,349,213 - +0.3 1,349,214 + +0.2 1,349,214 + -2.0 1,349,215 - -2.0 1,349,215 - -0.7 1,349,215 - +0.1 1,349,300 - SMc01802 0.14 +2.5 1,349,333 + SMc01802 0.17 +0.3 1,349,334 - SMc01802 0.17 +0.0 1,349,334 - SMc01802 0.17 +1.1 1,349,334 - SMc01802 0.17 -0.5 1,349,334 - SMc01802 0.17 +0.5 1,349,422 - SMc01802 0.27 +1.2 1,349,456 - SMc01802 0.30 -1.4 1,349,712 + SMc01802 0.57 +1.5 1,349,713 - SMc01802 0.57 +0.4 1,349,713 - SMc01802 0.57 -0.3 1,349,713 - SMc01802 0.57 +0.5 1,349,713 - SMc01802 0.57 -1.0 1,349,749 - SMc01802 0.61 +0.6 1,349,818 - SMc01802 0.68 +0.3 1,350,021 + SMc01802 0.89 +0.4
Or see this region's nucleotide sequence