Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01593 and SMc01595 are separated by 34 nucleotides SMc01595 and SMc04456 are separated by 12 nucleotides SMc04456 and SMc02677 are separated by 107 nucleotides
SMc01593: SMc01593 - transcriptional regulator, at 2,525,165 to 2,525,869
SMc01593
SMc01595: SMc01595 - sensor histidine kinase transmembrane protein, at 2,525,904 to 2,527,286
SMc01595
SMc04456: SMc04456 - chaperone protein, at 2,527,299 to 2,527,640
SMc04456
SMc02677: SMc02677 - pyrroline-5-carboxylate reductase, at 2,527,748 to 2,528,566
SMc02677
Position (kb)
2525
2526
2527
2528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2524.929 kb on + strand at 2524.930 kb on - strand at 2524.930 kb on - strand at 2524.930 kb on - strand at 2524.930 kb on - strand at 2527.011 kb on + strand, within SMc01595 at 2527.011 kb on + strand, within SMc01595 at 2527.012 kb on - strand, within SMc01595 at 2527.012 kb on - strand, within SMc01595 at 2527.018 kb on - strand, within SMc01595 at 2527.285 kb on - strand at 2527.471 kb on + strand, within SMc04456 at 2527.471 kb on + strand, within SMc04456 at 2527.472 kb on - strand, within SMc04456 at 2527.621 kb on + strand at 2527.680 kb on - strand at 2527.680 kb on - strand at 2527.961 kb on + strand, within SMc02677 at 2527.961 kb on + strand, within SMc02677 at 2527.961 kb on + strand, within SMc02677 at 2527.962 kb on - strand, within SMc02677 at 2528.017 kb on - strand, within SMc02677 at 2528.017 kb on - strand, within SMc02677 at 2528.198 kb on - strand, within SMc02677
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,524,929 + -2.0 2,524,930 - +1.1 2,524,930 - +0.3 2,524,930 - +0.1 2,524,930 - -0.8 2,527,011 + SMc01595 0.80 -2.1 2,527,011 + SMc01595 0.80 -1.6 2,527,012 - SMc01595 0.80 -0.9 2,527,012 - SMc01595 0.80 -1.1 2,527,018 - SMc01595 0.81 -0.6 2,527,285 - -0.3 2,527,471 + SMc04456 0.50 -0.1 2,527,471 + SMc04456 0.50 +0.4 2,527,472 - SMc04456 0.51 +0.2 2,527,621 + -0.1 2,527,680 - +0.3 2,527,680 - +1.8 2,527,961 + SMc02677 0.26 -2.0 2,527,961 + SMc02677 0.26 -1.1 2,527,961 + SMc02677 0.26 -2.8 2,527,962 - SMc02677 0.26 -0.1 2,528,017 - SMc02677 0.33 +0.2 2,528,017 - SMc02677 0.33 -1.6 2,528,198 - SMc02677 0.55 -1.1
Or see this region's nucleotide sequence