Strain Fitness in Sinorhizobium meliloti 1021 around SMc01494

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01435 and SMc01494 overlap by 2 nucleotidesSMc01494 and SMc01437 overlap by 4 nucleotidesSMc01437 and SMc01438 are separated by 31 nucleotides SMc01435: SMc01435 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,279,982 to 2,280,893 SMc01435 SMc01494: SMc01494 - phosphoserine phosphatase, at 2,280,892 to 2,281,779 SMc01494 SMc01437: SMc01437 - acetyl transferase, at 2,281,776 to 2,282,351 SMc01437 SMc01438: SMc01438 - protease precursor signal peptide protein, at 2,282,383 to 2,283,894 SMc01438 Position (kb) 2280 2281 2282Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2279.895 kb on - strandat 2279.895 kb on - strandat 2279.901 kb on + strandat 2279.902 kb on - strandat 2279.902 kb on - strandat 2279.971 kb on + strandat 2279.983 kb on + strandat 2279.983 kb on + strandat 2280.008 kb on + strandat 2280.919 kb on - strandat 2280.991 kb on + strand, within SMc01494at 2280.992 kb on - strand, within SMc01494at 2281.026 kb on - strand, within SMc01494at 2281.026 kb on - strand, within SMc01494at 2281.331 kb on + strand, within SMc01494at 2281.332 kb on - strand, within SMc01494at 2281.342 kb on - strand, within SMc01494at 2281.342 kb on - strand, within SMc01494at 2281.399 kb on + strand, within SMc01494at 2281.399 kb on + strand, within SMc01494at 2281.400 kb on - strand, within SMc01494at 2281.400 kb on - strand, within SMc01494at 2281.400 kb on - strand, within SMc01494at 2281.664 kb on + strand, within SMc01494at 2281.710 kb on + strandat 2281.741 kb on + strandat 2282.349 kb on + strandat 2282.350 kb on - strandat 2282.384 kb on + strandat 2282.581 kb on + strand, within SMc01438at 2282.582 kb on - strand, within SMc01438

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,279,895 - +0.1
2,279,895 - +0.6
2,279,901 + -0.6
2,279,902 - -1.5
2,279,902 - -0.1
2,279,971 + +0.2
2,279,983 + -0.1
2,279,983 + -0.6
2,280,008 + +0.8
2,280,919 - -4.5
2,280,991 + SMc01494 0.11 -4.1
2,280,992 - SMc01494 0.11 -3.6
2,281,026 - SMc01494 0.15 -3.4
2,281,026 - SMc01494 0.15 -4.0
2,281,331 + SMc01494 0.49 -2.4
2,281,332 - SMc01494 0.50 -4.9
2,281,342 - SMc01494 0.51 -4.7
2,281,342 - SMc01494 0.51 -3.2
2,281,399 + SMc01494 0.57 -2.2
2,281,399 + SMc01494 0.57 -5.3
2,281,400 - SMc01494 0.57 -0.9
2,281,400 - SMc01494 0.57 -5.6
2,281,400 - SMc01494 0.57 -1.7
2,281,664 + SMc01494 0.87 -2.9
2,281,710 + -4.1
2,281,741 + -2.7
2,282,349 + -0.5
2,282,350 - -0.5
2,282,384 + -0.2
2,282,581 + SMc01438 0.13 -1.0
2,282,582 - SMc01438 0.13 +2.1

Or see this region's nucleotide sequence