Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01129 and SMc01128 are separated by 506 nucleotides SMc01128 and SMc01127 are separated by 117 nucleotides
SMc01129: SMc01129 - lipoprotein signal peptidase, at 419,983 to 420,483
SMc01129
SMc01128: SMc01128 - sensor histidine kinase transmembrane protein, at 420,990 to 423,080
SMc01128
SMc01127: SMc01127 - hypothetical protein, at 423,198 to 424,088
SMc01127
Position (kb) 420
421
422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 420.481 kb on + strand at 420.537 kb on - strand at 420.537 kb on - strand at 420.537 kb on - strand at 420.772 kb on + strand at 420.772 kb on + strand at 420.772 kb on + strand at 420.827 kb on + strand at 420.827 kb on + strand at 420.827 kb on + strand at 420.828 kb on - strand at 420.828 kb on - strand at 420.828 kb on - strand at 420.963 kb on + strand at 421.078 kb on + strand at 421.078 kb on + strand at 421.079 kb on - strand at 421.079 kb on - strand at 421.358 kb on + strand, within SMc01128 at 421.359 kb on - strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.362 kb on + strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.363 kb on - strand, within SMc01128 at 421.365 kb on - strand, within SMc01128 at 421.460 kb on + strand, within SMc01128 at 421.460 kb on + strand, within SMc01128 at 421.641 kb on + strand, within SMc01128 at 421.641 kb on + strand, within SMc01128 at 421.641 kb on + strand, within SMc01128 at 421.642 kb on - strand, within SMc01128 at 422.315 kb on + strand, within SMc01128 at 422.316 kb on - strand at 422.484 kb on + strand, within SMc01128 at 422.484 kb on + strand, within SMc01128 at 422.484 kb on + strand, within SMc01128 at 422.485 kb on - strand, within SMc01128 at 422.539 kb on - strand, within SMc01128 at 422.896 kb on + strand at 422.897 kb on - strand at 423.119 kb on + strand at 423.119 kb on + strand at 423.120 kb on - strand at 423.120 kb on - strand at 423.138 kb on + strand at 423.138 kb on + strand at 423.139 kb on - strand at 423.139 kb on - strand at 423.139 kb on - strand at 423.139 kb on - strand at 423.161 kb on + strand at 423.162 kb on - strand at 423.162 kb on - strand at 423.197 kb on + strand at 423.197 kb on + strand at 423.198 kb on - strand at 423.198 kb on - strand at 423.198 kb on - strand at 423.249 kb on + strand at 423.249 kb on + strand at 423.250 kb on - strand at 423.364 kb on - strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.584 kb on - strand at 423.702 kb on + strand, within SMc01127 at 423.800 kb on + strand, within SMc01127 at 423.930 kb on + strand, within SMc01127 at 423.931 kb on - strand, within SMc01127 at 423.931 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 420,481 + -0.1 420,537 - -1.9 420,537 - -0.3 420,537 - +0.4 420,772 + -0.1 420,772 + +0.0 420,772 + -1.6 420,827 + -0.4 420,827 + -0.3 420,827 + -0.0 420,828 - -1.2 420,828 - +0.2 420,828 - -1.8 420,963 + -0.4 421,078 + +0.8 421,078 + -1.2 421,079 - -0.1 421,079 - -0.6 421,358 + SMc01128 0.18 -0.8 421,359 - SMc01128 0.18 +4.0 421,362 + SMc01128 0.18 -1.2 421,362 + SMc01128 0.18 +0.7 421,362 + SMc01128 0.18 +0.4 421,362 + SMc01128 0.18 +0.4 421,362 + SMc01128 0.18 -0.6 421,362 + SMc01128 0.18 -0.1 421,362 + SMc01128 0.18 +0.5 421,362 + SMc01128 0.18 +0.8 421,363 - SMc01128 0.18 +0.4 421,363 - SMc01128 0.18 +1.1 421,363 - SMc01128 0.18 -0.1 421,363 - SMc01128 0.18 -0.4 421,363 - SMc01128 0.18 -0.4 421,363 - SMc01128 0.18 -1.8 421,363 - SMc01128 0.18 +0.2 421,363 - SMc01128 0.18 -0.7 421,365 - SMc01128 0.18 -0.5 421,460 + SMc01128 0.22 +1.1 421,460 + SMc01128 0.22 +0.7 421,641 + SMc01128 0.31 +0.2 421,641 + SMc01128 0.31 +0.5 421,641 + SMc01128 0.31 +1.4 421,642 - SMc01128 0.31 +0.5 422,315 + SMc01128 0.63 +0.5 422,316 - +5.4 422,484 + SMc01128 0.71 +1.2 422,484 + SMc01128 0.71 +0.3 422,484 + SMc01128 0.71 +0.1 422,485 - SMc01128 0.71 +0.5 422,539 - SMc01128 0.74 +1.2 422,896 + +1.4 422,897 - +0.9 423,119 + -0.2 423,119 + -0.5 423,120 - -1.0 423,120 - +0.4 423,138 + +0.3 423,138 + +1.3 423,139 - +1.6 423,139 - -0.0 423,139 - +0.3 423,139 - +0.8 423,161 + -0.9 423,162 - -0.1 423,162 - +0.4 423,197 + +1.2 423,197 + -0.9 423,198 - +0.9 423,198 - +0.3 423,198 - -1.4 423,249 + +1.0 423,249 + +0.7 423,250 - -0.2 423,364 - SMc01127 0.19 +0.8 423,473 + SMc01127 0.31 -3.0 423,473 + SMc01127 0.31 -1.2 423,473 + SMc01127 0.31 -0.4 423,584 - +2.4 423,702 + SMc01127 0.57 -0.6 423,800 + SMc01127 0.68 +0.8 423,930 + SMc01127 0.82 -0.2 423,931 - SMc01127 0.82 +0.1 423,931 - SMc01127 0.82 +0.2 423,933 - SMc01127 0.82 -0.3 423,933 - SMc01127 0.82 -1.6 423,933 - SMc01127 0.82 -0.9
Or see this region's nucleotide sequence