Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00993 and SMc00992 are separated by 126 nucleotides SMc00992 and SMc00991 overlap by 4 nucleotides
SMc00993: SMc00993 - phosphoribosylamine--glycine ligase, at 938,694 to 939,965
SMc00993
SMc00992: SMc00992 - hypothetical protein, at 940,092 to 942,464
SMc00992
SMc00991: SMc00991 - putrescine-binding periplasmic protein, at 942,461 to 943,501
SMc00991
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 939.118 kb on + strand, within SMc00993 at 939.119 kb on - strand, within SMc00993 at 939.119 kb on - strand, within SMc00993 at 939.119 kb on - strand, within SMc00993 at 939.119 kb on - strand, within SMc00993 at 939.329 kb on + strand, within SMc00993 at 939.330 kb on - strand, within SMc00993 at 939.330 kb on - strand, within SMc00993 at 939.409 kb on + strand, within SMc00993 at 939.409 kb on + strand, within SMc00993 at 939.569 kb on + strand, within SMc00993 at 939.571 kb on + strand, within SMc00993 at 939.571 kb on + strand, within SMc00993 at 939.597 kb on - strand, within SMc00993 at 939.597 kb on - strand, within SMc00993 at 939.597 kb on - strand, within SMc00993 at 939.606 kb on - strand, within SMc00993 at 939.606 kb on - strand, within SMc00993 at 939.708 kb on - strand, within SMc00993 at 939.867 kb on - strand at 940.214 kb on - strand at 940.402 kb on + strand, within SMc00992 at 940.403 kb on - strand, within SMc00992 at 940.430 kb on - strand, within SMc00992 at 940.984 kb on + strand, within SMc00992 at 940.985 kb on - strand, within SMc00992 at 940.985 kb on - strand, within SMc00992 at 941.335 kb on - strand, within SMc00992 at 941.694 kb on + strand, within SMc00992 at 941.836 kb on + strand, within SMc00992 at 941.837 kb on - strand, within SMc00992 at 941.837 kb on - strand, within SMc00992 at 941.965 kb on + strand, within SMc00992 at 941.966 kb on - strand, within SMc00992 at 941.966 kb on - strand, within SMc00992 at 942.001 kb on + strand, within SMc00992 at 942.001 kb on + strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.100 kb on + strand, within SMc00992 at 942.101 kb on - strand, within SMc00992 at 942.143 kb on + strand, within SMc00992 at 942.238 kb on + strand at 942.409 kb on + strand at 942.410 kb on - strand at 942.508 kb on + strand at 942.757 kb on + strand, within SMc00991 at 942.757 kb on + strand, within SMc00991 at 942.757 kb on + strand, within SMc00991 at 942.849 kb on + strand, within SMc00991 at 942.850 kb on - strand, within SMc00991 at 942.850 kb on - strand, within SMc00991 at 942.851 kb on + strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.853 kb on + strand, within SMc00991 at 942.853 kb on + strand, within SMc00991 at 942.854 kb on - strand, within SMc00991 at 942.854 kb on - strand, within SMc00991 at 942.894 kb on + strand, within SMc00991 at 942.895 kb on - strand, within SMc00991 at 942.901 kb on - strand, within SMc00991 at 942.901 kb on - strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.189 kb on - strand, within SMc00991 at 943.189 kb on - strand, within SMc00991 at 943.402 kb on + strand at 943.403 kb on - strand at 943.404 kb on + strand at 943.405 kb on - strand at 943.405 kb on - strand at 943.405 kb on - strand at 943.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 939,118 + SMc00993 0.33 -2.3 939,119 - SMc00993 0.33 -4.3 939,119 - SMc00993 0.33 -3.1 939,119 - SMc00993 0.33 -1.9 939,119 - SMc00993 0.33 -2.4 939,329 + SMc00993 0.50 +1.3 939,330 - SMc00993 0.50 -2.4 939,330 - SMc00993 0.50 -2.8 939,409 + SMc00993 0.56 -2.3 939,409 + SMc00993 0.56 -2.0 939,569 + SMc00993 0.69 -3.9 939,571 + SMc00993 0.69 -4.5 939,571 + SMc00993 0.69 -2.2 939,597 - SMc00993 0.71 -3.2 939,597 - SMc00993 0.71 -5.4 939,597 - SMc00993 0.71 -3.8 939,606 - SMc00993 0.72 -0.5 939,606 - SMc00993 0.72 -4.6 939,708 - SMc00993 0.80 -3.1 939,867 - -5.2 940,214 - -2.2 940,402 + SMc00992 0.13 +1.3 940,403 - SMc00992 0.13 +0.4 940,430 - SMc00992 0.14 -0.5 940,984 + SMc00992 0.38 -0.6 940,985 - SMc00992 0.38 -0.3 940,985 - SMc00992 0.38 -0.4 941,335 - SMc00992 0.52 +0.5 941,694 + SMc00992 0.68 +0.3 941,836 + SMc00992 0.73 +0.0 941,837 - SMc00992 0.74 +3.3 941,837 - SMc00992 0.74 +0.2 941,965 + SMc00992 0.79 -0.8 941,966 - SMc00992 0.79 +1.5 941,966 - SMc00992 0.79 +0.7 942,001 + SMc00992 0.80 -0.6 942,001 + SMc00992 0.80 +0.5 942,002 - SMc00992 0.80 -1.2 942,002 - SMc00992 0.80 +0.7 942,002 - SMc00992 0.80 +1.5 942,002 - SMc00992 0.80 -1.9 942,002 - SMc00992 0.80 -0.2 942,100 + SMc00992 0.85 +1.2 942,101 - SMc00992 0.85 +1.0 942,143 + SMc00992 0.86 +0.0 942,238 + -0.6 942,409 + -0.3 942,410 - -0.3 942,508 + +0.7 942,757 + SMc00991 0.28 -0.2 942,757 + SMc00991 0.28 -0.3 942,757 + SMc00991 0.28 -0.4 942,849 + SMc00991 0.37 +0.5 942,850 - SMc00991 0.37 -0.0 942,850 - SMc00991 0.37 -0.1 942,851 + SMc00991 0.37 -1.3 942,852 - SMc00991 0.38 -0.2 942,852 - SMc00991 0.38 +0.6 942,852 - SMc00991 0.38 -0.1 942,852 - SMc00991 0.38 -3.1 942,852 - SMc00991 0.38 +1.5 942,852 - SMc00991 0.38 -1.3 942,853 + SMc00991 0.38 -0.4 942,853 + SMc00991 0.38 -0.6 942,854 - SMc00991 0.38 -0.5 942,854 - SMc00991 0.38 -0.1 942,894 + SMc00991 0.42 -1.3 942,895 - SMc00991 0.42 +0.0 942,901 - SMc00991 0.42 +0.7 942,901 - SMc00991 0.42 +0.1 943,188 + SMc00991 0.70 -0.1 943,188 + SMc00991 0.70 +0.6 943,188 + SMc00991 0.70 +0.2 943,189 - SMc00991 0.70 +0.2 943,189 - SMc00991 0.70 -0.3 943,402 + +2.9 943,403 - +0.5 943,404 + -0.7 943,405 - -0.8 943,405 - -0.6 943,405 - +0.1 943,418 - -0.0
Or see this region's nucleotide sequence