Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00908 and SMc00907 are separated by 139 nucleotides SMc00907 and SMc00906 are separated by 62 nucleotides SMc00906 and SMc00905 are separated by 43 nucleotides SMc00905 and SMc00904 are separated by 74 nucleotides
SMc00908: SMc00908 - isoleucyl-tRNA synthetase, at 874,682 to 877,591
SMc00908
SMc00907: SMc00907 - hypothetical protein, at 877,731 to 878,345
SMc00907
SMc00906: SMc00906 - acetyltransferase, at 878,408 to 878,887
SMc00906
SMc00905: SMc00905 - deaminase, at 878,931 to 879,380
SMc00905
SMc00904: SMc00904 - hypothetical protein, at 879,455 to 881,176
SMc00904
Position (kb) 878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 877.590 kb on - strand at 878.402 kb on + strand at 878.615 kb on + strand, within SMc00906 at 878.615 kb on + strand, within SMc00906 at 878.616 kb on - strand, within SMc00906 at 878.616 kb on - strand, within SMc00906 at 878.616 kb on - strand, within SMc00906 at 878.621 kb on + strand, within SMc00906 at 878.621 kb on + strand, within SMc00906 at 878.622 kb on - strand, within SMc00906 at 878.622 kb on - strand, within SMc00906 at 878.652 kb on - strand, within SMc00906 at 878.652 kb on - strand, within SMc00906 at 878.666 kb on + strand, within SMc00906 at 878.801 kb on + strand, within SMc00906 at 878.801 kb on + strand, within SMc00906 at 878.802 kb on - strand, within SMc00906 at 878.933 kb on - strand at 878.933 kb on - strand at 879.415 kb on + strand at 879.426 kb on - strand at 879.426 kb on - strand at 879.680 kb on - strand, within SMc00904 at 879.785 kb on + strand, within SMc00904 at 879.785 kb on + strand, within SMc00904
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 877,590 - -0.5 878,402 + +1.9 878,615 + SMc00906 0.43 +0.6 878,615 + SMc00906 0.43 +0.3 878,616 - SMc00906 0.43 +0.4 878,616 - SMc00906 0.43 -0.2 878,616 - SMc00906 0.43 -0.1 878,621 + SMc00906 0.44 -0.8 878,621 + SMc00906 0.44 +0.1 878,622 - SMc00906 0.45 +0.2 878,622 - SMc00906 0.45 -0.1 878,652 - SMc00906 0.51 +0.3 878,652 - SMc00906 0.51 +0.9 878,666 + SMc00906 0.54 +1.2 878,801 + SMc00906 0.82 +0.3 878,801 + SMc00906 0.82 +1.3 878,802 - SMc00906 0.82 -1.8 878,933 - -0.5 878,933 - +0.6 879,415 + -0.1 879,426 - -0.3 879,426 - -0.5 879,680 - SMc00904 0.13 +1.3 879,785 + SMc00904 0.19 +0.7 879,785 + SMc00904 0.19 -0.1
Or see this region's nucleotide sequence